Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003500.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

59861 .. 63338

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003500.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggcaaaattcttgcaacggcaaagggttgccgttgctaataaccttgcgacggtgcatttgccgtcgcaaataccaatggcgacgccctcaacgacatcggcgcaattgtcgtcgcttagcagtctccattggtctttcgcgacggcaatttcactttctgcgatggcacatcaccgtggcaagttgaattttttttttgtagtgagtggtggaggaaatggaggttgtagtggtggaaatgagaccgagggattcgaggtcggagatttcccgacggtgagtttgaatttggaattggtgctgaagctggagtcggcgcttggggtttctctgggaggctcggtgacggacatggcggtggtgatagcgacgacttcaattgagttgataattgggtttttggtggtgctgtggcggagatcgtctgataagactagtctggtggtgaagcagctggcggtgccgtttaaggaggaggaagatgagtttgaggttgcgtcaggcaagactagggtgactattttctctgggactcagaccggcactgctgaaggtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

187

Amino Acids

19.75

Weight (kDa)

5.78

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccII	CGCG	1 cut(s)	143
AciI	CCGC	3 cut(s)	359, 418, 461
AcsI	RAATTY	3 cut(s)	8, 190, 289
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	190, 289, 381
AhlI	ACTAGT	1 cut(s)	437
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	2 cut(s)	310, 457
AluI	AGCT	2 cut(s)	310, 457
Alw26I	GTCTC	2 cut(s)	131, 239
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	3 cut(s)	8, 190, 289
ArsI	GACNNNNNNTTYG	4 cut(s)	43, 75, 268, 300
AspLEI	GCGC	2 cut(s)	106, 322
AsuHPI	GGTGA	6 cut(s)	167, 292, 358, 376, 460, 529
BanI	GGYRCC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	5 cut(s)	17, 35, 49, 162, 451
BcoDI	GTCTC	2 cut(s)	131, 239
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	2 cut(s)	438, 513
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	1 cut(s)	455
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	178, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	178, 249
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	131, 239
BsmFI	GGGAC	1 cut(s)	547
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	422
Bsp1720I	GCTNAGC	1 cut(s)	119
Bsp68I	TCGCGA	1 cut(s)	143
BspACI	CCGC	3 cut(s)	359, 418, 461
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	542
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	178, 249
BssMI	GATC	1 cut(s)	422
BssNI	GRCGYC	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	55, 179, 280
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	119, 537
BstDSI	CCRYGG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	106, 322
BstKTI	GATC	1 cut(s)	425
BstMAI	GTCTC	2 cut(s)	131, 239
BstMBI	GATC	1 cut(s)	422
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
BtuMI	TCGCGA	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	2 cut(s)	106, 322
Cfr10I	RCCGGY	1 cut(s)	542
CseI	GACGC	2 cut(s)	94, 489
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	3 cut(s)	310, 342, 457
CviKI_1	RGCY	3 cut(s)	310, 342, 457
DdeI	CTNAG	2 cut(s)	119, 537
DpnI	GATC	1 cut(s)	424
DpnII	GATC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	326
FaeI	CATG	1 cut(s)	358
FaiI	YATR	1 cut(s)	356
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	2 cut(s)	438, 513
GlaI	GCGC	2 cut(s)	105, 321
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	323
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	2 cut(s)	94, 489
HhaI	GCGC	2 cut(s)	106, 322
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	104, 320
HinP1I	GCGC	2 cut(s)	104, 320
HinfI	GANTC	3 cut(s)	255, 314, 535
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	6 cut(s)	167, 292, 358, 376, 460, 529
Hpy188I	TCNGA	3 cut(s)	266, 430, 540
Hpy188III	TCNNGA	2 cut(s)	142, 274
Hpy99I	CGWCG	7 cut(s)	55, 70, 88, 118, 148, 280, 376
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	3 cut(s)	55, 179, 280
HpyCH4V	TGCA	2 cut(s)	16, 58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	2 cut(s)	119, 537
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	104, 320
Kzo9I	GATC	1 cut(s)	422
LpnPI	CCDG	7 cut(s)	296, 320, 428, 443, 489, 516, 556
Lsp1109I	GCAGC	1 cut(s)	466
MaeI	CTAG	2 cut(s)	438, 513
MaeIII	GTNAC	2 cut(s)	346, 517
MalI	GATC	1 cut(s)	424
MboI	GATC	1 cut(s)	422
MboII	GAAGA	1 cut(s)	494
MfeI	CAATTG	2 cut(s)	107, 381
MluCI	AATT	8 cut(s)	8, 107, 150, 190, 289, 296, 381, 393
MlyI	GAGTC	2 cut(s)	323, 529
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	100, 209, 218, 244, 253, 332, 469, 472, 487
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	177, 359
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	543
MunI	CAATTG	2 cut(s)	107, 381
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	1 cut(s)	422
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	2 cut(s)	346, 517
NruI	TCGCGA	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	456
PleI	GAGTC	2 cut(s)	322, 529
PpsI	GAGTC	2 cut(s)	322, 529
PspN4I	GGNNCC	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	457
RruI	TCGCGA	1 cut(s)	143
RseI	CAYNNNNRTG	2 cut(s)	177, 359
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	1 cut(s)	422
SchI	GAGTC	2 cut(s)	323, 529
SetI	ASST	7 cut(s)	48, 229, 264, 312, 459, 498, 559
SmiMI	CAYNNNNRTG	2 cut(s)	177, 359
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	8 cut(s)	8, 107, 150, 190, 289, 296, 381, 393
SsiI	CCGC	3 cut(s)	359, 418, 461
SspMI	CTAG	2 cut(s)	438, 513
TaaI	ACNGT	3 cut(s)	55, 179, 280
TaqI	TCGA	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	8 cut(s)	8, 107, 150, 190, 289, 296, 381, 393
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	2 cut(s)	346, 517
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	2 cut(s)	346, 517
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	553
XapI	RAATTY	3 cut(s)	8, 190, 289
XspI	CTAG	2 cut(s)	438, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.