Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004199.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

109320 .. 113520

Gene Structure 4201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004199.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgatgcacccagggacaagatctataccacactcaccacctcttacaaggacatctggaacagacatagagatatcatcccacacctaccaaagcgcagacccggacatgagaagccataagacaacgaaaatcaagagctctgccgctccgattcatttcgcagagaccgagggattcgaggttagagatttcccgacagtgagtttgaattcggaattggtgtggaagttggagtcggcgcttggggtttcgctgggcggcttggtgacggacatggcggtggtgatagtgacgacttcatttgagttgataattgggtttttggtggtgctgtggcggagatcgtctgataagactagtcgggtggtgatgcagctggcggtgccgcttaaggaggaggaagatgagtttgaggttgcatcgggcaagactagggtgactattttctctaggactcagaccggcaccgctgaaggtttcgccaagtttccatccatgcaagaattaagtccagttcaggtatatctcttttgccccacaaaaggtctagcagcatctctgtttgctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

191

Amino Acids

20.88

Weight (kDa)

5.96

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	385, 467
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	7 cut(s)	147, 261, 281, 340, 383, 389, 471
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	545
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	211
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	10
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	2 cut(s)	141, 379
AluI	AGCT	2 cut(s)	141, 379
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	376, 554, 569
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspLEI	GCGC	2 cut(s)	98, 244
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	5 cut(s)	27, 280, 298, 382, 451
BanI	GGYRCC	2 cut(s)	385, 467
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	388, 556, 566
BccI	CCATC	1 cut(s)	502
BciT130I	CCWGG	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	4 cut(s)	360, 435, 453, 551
BfoI	RGCGCY	1 cut(s)	245
BfrI	CTTAAG	1 cut(s)	392
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	6 cut(s)	147, 262, 377, 389, 555, 570
BlsI	GCNGC	6 cut(s)	148, 263, 378, 390, 556, 571
Bme1390I	CCNGG	2 cut(s)	12, 104
BmiI	GGNNCC	2 cut(s)	387, 469
BmrFI	CCNGG	2 cut(s)	12, 104
BmsI	GCATC	3 cut(s)	363, 431, 566
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	10, 11, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	10, 11, 171
BseGI	GGATG	2 cut(s)	77, 494
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	388, 556, 566
BseYI	CCCAGC	1 cut(s)	256
BshNI	GGYRCC	2 cut(s)	385, 467
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	104, 465
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	28
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	20, 344
BspACI	CCGC	7 cut(s)	147, 261, 281, 340, 383, 389, 471
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	387, 469
BspT107I	GGYRCC	2 cut(s)	385, 467
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	10, 11, 171
BssMI	GATC	2 cut(s)	20, 344
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	202
BstAFI	CTTAAG	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	77, 494
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	98, 244
BstKTI	GATC	2 cut(s)	23, 347
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	20, 344
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	10, 102
BstV1I	GCAGC	3 cut(s)	388, 556, 566
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	77, 494
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	2 cut(s)	98, 244
Cfr10I	RCCGGY	1 cut(s)	464
CviAII	CATG	4 cut(s)	109, 277, 499, 573
CviJI	RGCY	4 cut(s)	117, 141, 264, 379
CviKI_1	RGCY	4 cut(s)	117, 141, 264, 379
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	2 cut(s)	22, 346
DpnII	GATC	2 cut(s)	20, 344
EciI	GGCGGA	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	4 cut(s)	112, 280, 502, 576
FaiI	YATR	8 cut(s)	26, 68, 110, 120, 278, 500, 526, 574
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	4 cut(s)	108, 276, 498, 572
Fnu4HI	GCNGC	6 cut(s)	147, 262, 377, 389, 555, 570
FokI	GGATG	2 cut(s)	64, 481
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	6 cut(s)	147, 262, 377, 389, 555, 570
FspBI	CTAG	4 cut(s)	360, 435, 453, 551
GlaI	GCGC	2 cut(s)	97, 243
GluI	GCNGC	6 cut(s)	147, 262, 377, 389, 555, 570
GsaI	CCCAGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	245
HapII	CCGG	2 cut(s)	104, 465
HhaI	GCGC	2 cut(s)	98, 244
Hin1II	CATG	4 cut(s)	112, 280, 502, 576
Hin6I	GCGC	2 cut(s)	96, 242
HinP1I	GCGC	2 cut(s)	96, 242
HinfI	GANTC	4 cut(s)	154, 177, 236, 457
HpaII	CCGG	2 cut(s)	104, 465
HphI	GGTGA	5 cut(s)	27, 280, 298, 382, 451
Hpy188I	TCNGA	4 cut(s)	153, 217, 352, 462
Hpy188III	TCNNGA	3 cut(s)	57, 136, 196
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	5 cut(s)	7, 376, 422, 502, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	112, 280, 502, 576
HspAI	GCGC	2 cut(s)	96, 242
Kzo9I	GATC	2 cut(s)	20, 344
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	8 cut(s)	24, 42, 117, 242, 365, 478, 506, 528
Lsp1109I	GCAGC	3 cut(s)	388, 556, 566
LweI	GCATC	3 cut(s)	363, 431, 566
MaeI	CTAG	4 cut(s)	360, 435, 453, 551
MaeIII	GTNAC	3 cut(s)	268, 292, 439
MalI	GATC	2 cut(s)	22, 346
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	2 cut(s)	20, 344
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	4 cut(s)	211, 218, 315, 506
MlyI	GAGTC	2 cut(s)	245, 451
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	6 cut(s)	51, 166, 175, 391, 394, 409
MseI	TTAA	2 cut(s)	393, 509
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	379, 473
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	2 cut(s)	104, 465
MspR9I	CCNGG	2 cut(s)	12, 104
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	20, 344
NlaIII	CATG	4 cut(s)	112, 280, 502, 576
NlaIV	GGNNCC	2 cut(s)	387, 469
NmuCI	GTSAC	3 cut(s)	268, 292, 439
PasI	CCCWGGG	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	154, 177
PkrI	GCNGC	6 cut(s)	148, 263, 378, 390, 556, 571
PleI	GAGTC	2 cut(s)	244, 451
PpsI	GAGTC	2 cut(s)	244, 451
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	387, 469
PsuI	RGATCY	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	393, 509
SatI	GCNGC	6 cut(s)	147, 262, 377, 389, 555, 570
Sau3AI	GATC	2 cut(s)	20, 344
SchI	GAGTC	2 cut(s)	245, 451
ScrFI	CCNGG	2 cut(s)	12, 104
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	9 cut(s)	43, 89, 143, 186, 381, 420, 481, 525, 550
SfaNI	GCATC	3 cut(s)	363, 431, 566
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	4 cut(s)	211, 218, 315, 506
SsiI	CCGC	7 cut(s)	147, 261, 281, 340, 383, 389, 471
SspMI	CTAG	4 cut(s)	360, 435, 453, 551
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	10, 102
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	180
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	211, 218, 315, 506
TauI	GCSGC	3 cut(s)	149, 264, 391
TfiI	GAWTC	2 cut(s)	154, 177
Tru1I	TTAA	2 cut(s)	393, 509
Tru9I	TTAA	2 cut(s)	393, 509
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	3 cut(s)	268, 292, 439
TseI	GCWGC	3 cut(s)	376, 554, 569
Tsp45I	GTSAC	3 cut(s)	268, 292, 439
TspDTI	ATGAA	2 cut(s)	146, 291
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	207
Vha464I	CTTAAG	1 cut(s)	392
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	4 cut(s)	360, 435, 453, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.