Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

42664952 .. 42714201

Gene Structure 49250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG389500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTCCAACAAATGACGGAACAGGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAAGTCGTGTGGGGTTTCAAAGTTCTTGCAAATTCAGAGATTGGAGTTGCTGGCCTCCGCTATGCCCTGGAAGTGGCAAAACATGGATCTGTTGCTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTCAAGAGTATGTTATAGAACCAATTGTACACAAGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGACAAGATTTGAAGGTACAAGATTTCAAGATTGTTGCTCTCGCCCAGCAAATCCAGATGAAGATGAAGGGAATGTTGAGGTGGCCTCCGCCAGCTTCTGGCTCCGAGTTTCCATACAAGAAACCCAATTCACCTACAAATTAACCAAAAACCCCAAATCTGAAACAAACTCAAATCACCACTTTCTATTGCACTTTACAATCAGCATACAATGCAAGCAACCAATCTGTCCTAATTGTATTCCGCTACCAACCACCATTCGCAACTCTAGAATCATAACACAACTGACCATCAATCCTCAACAACAAGCTGGAGGAAGAATCAGAGTCCAACCAGGACAGAAACCTATTTCTGGACTTCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

219

Amino Acids

24.44

Weight (kDa)

6.31

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	390
AciI	CCGC	3 cut(s)	139, 381, 536
AclWI	GGATC	3 cut(s)	175, 271, 282
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	2 cut(s)	249, 310
AfiI	CCNNNNNNNGG	3 cut(s)	154, 390, 644
AgsI	TTSAA	4 cut(s)	100, 305, 320, 653
AjnI	CCWGG	3 cut(s)	70, 147, 625
AluBI	AGCT	2 cut(s)	387, 602
AluI	AGCT	2 cut(s)	387, 602
AlwI	GGATC	3 cut(s)	175, 271, 282
AlwNI	CAGNNNCTG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	133, 375
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	1 cut(s)	639
AsuHPI	GGTGA	3 cut(s)	59, 415, 461
BccI	CCATC	3 cut(s)	38, 56, 590
BciT130I	CCWGG	3 cut(s)	72, 149, 627
BfaI	CTAG	1 cut(s)	561
BlpI	GCTNAGC	1 cut(s)	192
Bme1390I	CCNGG	3 cut(s)	72, 149, 627
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	3 cut(s)	72, 149, 627
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpmI	CTGGAG	2 cut(s)	93, 624
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	147, 186
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 390, 644
BseBI	CCWGG	3 cut(s)	72, 149, 627
BseDI	CCNNGG	2 cut(s)	147, 186
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	3 cut(s)	154, 390, 644
BseMII	CTCAG	2 cut(s)	183, 292
BseYI	CCCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	135, 377
BslI	CCNNNNNNNGG	3 cut(s)	154, 390, 644
BsnI	GGCC	2 cut(s)	135, 377
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	167, 263, 274
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	3 cut(s)	139, 381, 536
BspANI	GGCC	2 cut(s)	135, 377
BspCNI	CTCAG	2 cut(s)	184, 291
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	3 cut(s)	175, 271, 282
BsrGI	TGTACA	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	147, 186
BssMI	GATC	3 cut(s)	167, 263, 274
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	72, 149, 627
BstAPI	GCANNNNNTGC	1 cut(s)	504
BstAUI	TGTACA	1 cut(s)	247
BstC8I	GCNNGC	3 cut(s)	133, 385, 509
BstDEI	CTNAG	2 cut(s)	192, 278
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	170, 266, 277
BstMBI	GATC	3 cut(s)	167, 263, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	504
BstNI	CCWGG	3 cut(s)	72, 149, 627
BstSCI	CCNGG	3 cut(s)	70, 147, 625
BstX2I	RGATCY	3 cut(s)	167, 263, 274
BstYI	RGATCY	3 cut(s)	167, 263, 274
BsuRI	GGCC	2 cut(s)	135, 377
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	133, 385, 509
CaiI	CAGNNNCTG	1 cut(s)	390
CciI	TCATGA	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	248, 309
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	164, 200
CviJI	RGCY	7 cut(s)	135, 191, 196, 377, 387, 394, 602
CviKI_1	RGCY	7 cut(s)	135, 191, 196, 377, 387, 394, 602
CviQI	GTAC	2 cut(s)	248, 309
DdeI	CTNAG	2 cut(s)	192, 278
DpnI	GATC	3 cut(s)	169, 265, 276
DpnII	GATC	3 cut(s)	167, 263, 274
DraI	TTTAAA	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	186
EcoRII	CCWGG	3 cut(s)	70, 147, 625
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	167, 203
FatI	CATG	2 cut(s)	163, 199
FokI	GGATG	1 cut(s)	56
FspBI	CTAG	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	341
GsuI	CTGGAG	2 cut(s)	93, 624
HaeIII	GGCC	2 cut(s)	135, 377
Hin1II	CATG	2 cut(s)	167, 203
HinfI	GANTC	3 cut(s)	564, 612, 618
HphI	GGTGA	3 cut(s)	59, 415, 461
Hpy166II	GTNNAC	2 cut(s)	50, 250
Hpy188I	TCNGA	5 cut(s)	118, 281, 398, 454, 617
Hpy188III	TCNNGA	6 cut(s)	200, 224, 320, 347, 561, 645
Hpy8I	GTNNAC	2 cut(s)	50, 250
HpyAV	CCTTC	2 cut(s)	299, 353
HpyCH4V	TGCA	3 cut(s)	110, 484, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	504
HpyF3I	CTNAG	2 cut(s)	192, 278
Hsp92II	CATG	2 cut(s)	167, 203
Kzo9I	GATC	3 cut(s)	167, 263, 274
LmnI	GCTCC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	561
MalI	GATC	3 cut(s)	169, 265, 276
MboI	GATC	3 cut(s)	167, 263, 274
MboII	GAAGA	2 cut(s)	365, 621
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	3 cut(s)	167, 263, 274
MluCI	AATT	7 cut(s)	57, 112, 214, 243, 419, 431, 526
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	2 cut(s)	31, 646
MnlI	CCTC	8 cut(s)	19, 34, 146, 207, 364, 388, 599, 600
MseI	TTAA	2 cut(s)	80, 434
MspR9I	CCNGG	3 cut(s)	72, 149, 627
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	3 cut(s)	72, 149, 627
MwoI	GCNNNNNNNGC	1 cut(s)	504
NdeII	GATC	3 cut(s)	167, 263, 274
NlaIII	CATG	2 cut(s)	167, 203
NlaIV	GGNNCC	1 cut(s)	395
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	564, 612
PflMI	CCANNNNNTGG	1 cut(s)	390
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
Psp6I	CCWGG	3 cut(s)	70, 147, 625
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	3 cut(s)	70, 147, 625
PspN4I	GGNNCC	1 cut(s)	395
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
PstNI	CAGNNNCTG	1 cut(s)	390
PsuI	RGATCY	3 cut(s)	167, 263, 274
RsaI	GTAC	2 cut(s)	249, 310
RsaNI	GTAC	2 cut(s)	248, 309
SaqAI	TTAA	2 cut(s)	80, 434
Sau3AI	GATC	3 cut(s)	167, 263, 274
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	3 cut(s)	72, 149, 627
SetI	ASST	8 cut(s)	30, 73, 310, 375, 389, 428, 604, 640
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	7 cut(s)	57, 112, 214, 243, 419, 431, 526
SsiI	CCGC	3 cut(s)	139, 381, 536
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	70, 147, 625
StyI	CCWWGG	1 cut(s)	186
TasI	AATT	7 cut(s)	57, 112, 214, 243, 419, 431, 526
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	564, 612
Tru1I	TTAA	2 cut(s)	80, 434
Tru9I	TTAA	2 cut(s)	80, 434
TspDTI	ATGAA	3 cut(s)	216, 366, 372
TspGWI	ACGGA	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	390
XapI	RAATTY	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	560
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.