Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

64120486 .. 64122723

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0465300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCTAGCAGCGGGTTTTCAGGGACAGTTTCCGGGCCGAAGGTTGATGTGGCCATTGACATGGGTAACCCATTGCTCAATATCACCGTCGATGGTTTCTTGAAGATCGGAACCATTGCTGCTACCAGAGTTGCTGCAGAGGAAGCTTACCATGCCGCCAGGAAAGGGAGCGTATCAAGTCACAACTTTGAGCACACTTTGAAGAAGATGTGTAAAGAAGGTGCATATTGGGGAACTGTAGCTGGAGTTTATGTGGGAGCGGAGTATGGTGTCGAGAGGATCCGTGGCAGAAGAGACTGGAAGAATGCCATGATTGGGGGTGTAGTGACAGGGGCTGTAATATCTGCAGCCACCAGCAAGGACAAGGACAGGATTGTGGTCGATGCAATCACAGGAGGTGCCATTGCAACTGCTGCAGAATTCCTCAACTATCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

146

Amino Acids

15.31

Weight (kDa)

8.71

Isoelectric Point (pI)

12.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	40 - 135	4.3e-12	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	3 cut(s)	12, 156, 260
AclWI	GGATC	2 cut(s)	274, 287
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	419
AfiI	CCNNNNNNNGG	3 cut(s)	11, 165, 315
AgsI	TTSAA	2 cut(s)	103, 202
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	146, 242
AluI	AGCT	2 cut(s)	146, 242
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	274, 287
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	35, 51
ApeKI	GCWGC	5 cut(s)	9, 119, 134, 347, 413
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	21, 106, 121, 359, 400
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	4 cut(s)	135, 237, 345, 414
BisI	GCNGC	6 cut(s)	10, 120, 135, 156, 348, 414
BlsI	GCNGC	6 cut(s)	11, 121, 136, 157, 349, 415
Bme1390I	CCNGG	2 cut(s)	34, 160
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	3 cut(s)	112, 281, 400
BmrFI	CCNGG	2 cut(s)	34, 160
BmsI	GCATC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 165, 315
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	3 cut(s)	71, 114, 402
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	11, 165, 315
BseMI	GCAATG	3 cut(s)	71, 114, 402
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	5 cut(s)	21, 106, 121, 359, 400
BshFI	GGCC	2 cut(s)	37, 53
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	11, 165, 315
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	37, 53
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	105, 279
BspACI	CCGC	3 cut(s)	12, 156, 260
BspANI	GGCC	2 cut(s)	37, 53
BspLI	GGNNCC	3 cut(s)	112, 281, 400
BspMAI	CTGCAG	3 cut(s)	139, 349, 418
BspPI	GGATC	2 cut(s)	274, 287
BspT107I	GGYRCC	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	3 cut(s)	71, 114, 402
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	105, 279
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	28, 88, 238
Bst6I	CTCTTC	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	108, 282
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	105, 279
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 152, 413
BstNI	CCWGG	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	32, 158
BstSFI	CTRYAG	4 cut(s)	135, 237, 345, 414
BstV1I	GCAGC	5 cut(s)	21, 106, 121, 359, 400
BstX2I	RGATCY	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	37, 53
BtgI	CCRYGG	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	3 cut(s)	61, 152, 310
CviJI	RGCY	6 cut(s)	37, 53, 146, 242, 335, 350
CviKI_1	RGCY	6 cut(s)	37, 53, 146, 242, 335, 350
DpnI	GATC	2 cut(s)	107, 281
DpnII	GATC	2 cut(s)	105, 279
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco91I	GGTNACC	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	3 cut(s)	64, 155, 313
FaiI	YATR	6 cut(s)	62, 153, 226, 252, 267, 311
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	60, 151, 309
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	10, 120, 135, 156, 348, 414
Fsp4HI	GCNGC	6 cut(s)	10, 120, 135, 156, 348, 414
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	6 cut(s)	10, 120, 135, 156, 348, 414
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	37, 53
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	3 cut(s)	64, 155, 313
HindIII	AAGCTT	1 cut(s)	144
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	110, 440
Hpy188III	TCNNGA	2 cut(s)	100, 274
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	34, 212
HpyCH4III	ACNGT	3 cut(s)	28, 88, 238
HpyCH4V	TGCA	6 cut(s)	137, 224, 347, 386, 407, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 152, 413
Hsp92II	CATG	3 cut(s)	64, 155, 313
Kzo9I	GATC	2 cut(s)	105, 279
LmnI	GCTCC	2 cut(s)	168, 257
Lsp1109I	GCAGC	5 cut(s)	21, 106, 121, 359, 400
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	65, 179, 325
MalI	GATC	2 cut(s)	107, 281
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	2 cut(s)	105, 279
MboII	GAAGA	5 cut(s)	115, 214, 217, 303, 313
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	419
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	4 cut(s)	133, 270, 389, 434
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	34, 160
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	143, 152, 413
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	105, 279
NlaIII	CATG	3 cut(s)	64, 155, 313
NlaIV	GGNNCC	3 cut(s)	112, 281, 400
NmuCI	GTSAC	2 cut(s)	179, 325
PctI	GAATGC	1 cut(s)	310
PkrI	GCNGC	6 cut(s)	11, 121, 136, 157, 349, 415
Psp6I	CCWGG	1 cut(s)	158
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	112, 281, 400
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	3 cut(s)	139, 349, 418
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	6 cut(s)	10, 120, 135, 156, 348, 414
Sau3AI	GATC	2 cut(s)	105, 279
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	34, 160
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	5 cut(s)	45, 148, 223, 244, 400
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	4 cut(s)	135, 237, 345, 414
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	3 cut(s)	12, 156, 260
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	32, 158
TaaI	ACNGT	3 cut(s)	28, 88, 238
TaqI	TCGA	3 cut(s)	90, 273, 381
TasI	AATT	1 cut(s)	419
TauI	GCSGC	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	179, 325
TseI	GCWGC	5 cut(s)	9, 119, 134, 347, 413
Tsp45I	GTSAC	2 cut(s)	179, 325
TspGWI	ACGGA	1 cut(s)	272
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.