Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

45263199 .. 45286030

Gene Structure 22832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG242900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTTGGTTTTTGGTGGTGCTGTGGCGGAGATCGTCTGATAAGACTAGTTGGGTGGTGAAGCAGCTGGCTCTGAGCTCCAGCGGTCCAGCCTCCAGTTCTTCGGCAGCTCGGCCCTTGAGGCATGATCAGTTGCTGCCTTGCTGGGTTATTCACTCCAGTCACTCCACCGAATCTTGGATGTTAAAGAGGAACGGTGTGAATCAGAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGGATGCTGTAATGCATACTGAGAGGAGTGGGGAATCCAATTATCTTGCCAGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

10.27

Isoelectric Point (pI)

71.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 64, 120
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	27, 265
AhlI	ACTAGT	1 cut(s)	83
AluBI	AGCT	4 cut(s)	103, 114, 146, 261
AluI	AGCT	4 cut(s)	103, 114, 146, 261
Alw21I	GWGCWC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	172
AoxI	GGCC	2 cut(s)	149, 246
ApeKI	GCWGC	3 cut(s)	100, 143, 172
AspS9I	GGNCC	3 cut(s)	122, 150, 246
AsuHPI	GGTGA	2 cut(s)	22, 106
AvaII	GGWCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	112, 155, 159
BclI	TGATCA	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	157
BisI	GCNGC	3 cut(s)	101, 144, 173
BlsI	GCNGC	3 cut(s)	102, 145, 174
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	122, 150, 246
BmsI	GCATC	1 cut(s)	268
BpmI	CTGGAG	3 cut(s)	100, 115, 178
BpuEI	CTTGAG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	132, 195
BseGI	GGATG	2 cut(s)	222, 283
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	101, 285
BseNI	ACTGG	2 cut(s)	132, 195
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	112, 155, 159
BseYI	CCCAGC	1 cut(s)	180
BshFI	GGCC	2 cut(s)	151, 248
BsiHKAI	GWGCWC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	213
BsnI	GGCC	2 cut(s)	151, 248
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	68, 163
BspACI	CCGC	3 cut(s)	5, 64, 120
BspANI	GGCC	2 cut(s)	151, 248
BspCNI	CTCAG	2 cut(s)	102, 286
BsrI	ACTGG	2 cut(s)	132, 195
BssMI	GATC	2 cut(s)	68, 163
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	110, 294
BstF5I	GGATG	2 cut(s)	222, 283
BstKTI	GATC	2 cut(s)	71, 166
BstMBI	GATC	2 cut(s)	68, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	112, 155, 159
BsuRI	GGCC	2 cut(s)	151, 248
BtsCI	GGATG	2 cut(s)	222, 283
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	122, 150, 246
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	8 cut(s)	103, 107, 114, 128, 146, 151, 248, 261
CviKI_1	RGCY	8 cut(s)	103, 107, 114, 128, 146, 151, 248, 261
DdeI	CTNAG	2 cut(s)	110, 294
DpnI	GATC	2 cut(s)	70, 165
DpnII	GATC	2 cut(s)	68, 163
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	1 cut(s)	164
FaiI	YATR	2 cut(s)	162, 291
FatI	CATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	101, 144, 173
FokI	GGATG	2 cut(s)	229, 290
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	101, 144, 173
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	101, 144, 173
GsaI	CCCAGC	1 cut(s)	184
GsuI	CTGGAG	3 cut(s)	100, 115, 178
HaeIII	GGCC	2 cut(s)	151, 248
Hin1II	CATG	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	3 cut(s)	209, 238, 308
HphI	GGTGA	2 cut(s)	22, 106
Hpy188I	TCNGA	3 cut(s)	76, 111, 243
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	110, 294
Hsp92II	CATG	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	68, 163
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	6 cut(s)	89, 130, 138, 145, 166, 208
Lsp1109I	GCAGC	3 cut(s)	112, 155, 159
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	70, 165
MboI	GATC	2 cut(s)	68, 163
MboII	GAAGA	2 cut(s)	129, 277
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	3 cut(s)	27, 39, 313
MnlI	CCTC	5 cut(s)	139, 150, 219, 237, 291
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	2 cut(s)	221, 331
MspA1I	CMGCKG	2 cut(s)	103, 120
MunI	CAATTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	2 cut(s)	68, 163
NlaIII	CATG	1 cut(s)	164
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	209, 238, 308
PkrI	GCNGC	3 cut(s)	102, 145, 174
Psp124BI	GAGCTC	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	122, 150, 246
PstNI	CAGNNNCTG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	221, 331
SatI	GCNGC	3 cut(s)	101, 144, 173
Sau3AI	GATC	2 cut(s)	68, 163
Sau96I	GGNCC	3 cut(s)	122, 150, 246
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	4 cut(s)	105, 116, 148, 263
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	3 cut(s)	27, 39, 313
SsiI	CCGC	3 cut(s)	5, 64, 120
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	233
TasI	AATT	3 cut(s)	27, 39, 313
TfiI	GAWTC	3 cut(s)	209, 238, 308
Tru1I	TTAA	2 cut(s)	221, 331
Tru9I	TTAA	2 cut(s)	221, 331
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	3 cut(s)	100, 143, 172
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	122
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.