Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

58462084 .. 58467004

Gene Structure 4921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGTTGTGGCGGAGATCGTCTGATAAGACTAGTCAGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCGTCAGGCAAGACTAGGGTGACTATTTTCTCCGGGACTCAGACCGGCACCGCTGAAGGTTTCGCCAAGGATTGGTGGATCTGGTATGGATCTCATAAGCAAAGCAAGGACTCTGCCAGGACCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

90

Amino Acids

10.05

Weight (kDa)

6.56

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 191
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	5 cut(s)	5, 64, 107, 113, 195
AclWI	GGATC	2 cut(s)	230, 241
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	27
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
AlwI	GGATC	2 cut(s)	230, 241
AlwNI	CAGNNNCTG	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	22, 106, 175
AvaII	GGWCC	1 cut(s)	264
BanI	GGYRCC	2 cut(s)	109, 191
BbvI	GCAGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 159
BfrI	CTTAAG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	101, 113
BlsI	GCNGC	2 cut(s)	102, 114
Bme1390I	CCNGG	2 cut(s)	178, 262
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	111, 193
BmrFI	CCNGG	2 cut(s)	178, 262
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	112
BshNI	GGYRCC	2 cut(s)	109, 191
BsiSI	CCGG	2 cut(s)	177, 189
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	68, 222, 233
BspACI	CCGC	5 cut(s)	5, 64, 107, 113, 195
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	111, 193
BspPI	GGATC	2 cut(s)	230, 241
BspT107I	GGYRCC	2 cut(s)	109, 191
BspTI	CTTAAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	68, 222, 233
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	262
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	3 cut(s)	71, 225, 236
BstMBI	GATC	3 cut(s)	68, 222, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	176, 260
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	222, 233
BstYI	RGATCY	2 cut(s)	222, 233
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	264
CseI	GACGC	1 cut(s)	135
CviJI	RGCY	1 cut(s)	103
CviKI_1	RGCY	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	3 cut(s)	70, 224, 235
DpnII	GATC	3 cut(s)	68, 222, 233
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	2 cut(s)	231, 240
FaqI	GGGAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	101, 113
Fsp4HI	GCNGC	2 cut(s)	101, 113
FspBI	CTAG	2 cut(s)	84, 159
GluI	GCNGC	2 cut(s)	101, 113
HapII	CCGG	2 cut(s)	177, 189
HgaI	GACGC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	181, 254
HpaII	CCGG	2 cut(s)	177, 189
HphI	GGTGA	3 cut(s)	22, 106, 175
Hpy188I	TCNGA	2 cut(s)	76, 186
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	68, 222, 233
LpnPI	CCDG	7 cut(s)	74, 89, 135, 190, 202, 211, 247
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	84, 159
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	70, 224, 235
MboI	GATC	3 cut(s)	68, 222, 233
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	2 cut(s)	222, 233
MluCI	AATT	2 cut(s)	27, 39
MlyI	GAGTC	2 cut(s)	175, 248
MnlI	CCTC	3 cut(s)	115, 118, 133
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	103, 197
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	177, 189
MspR9I	CCNGG	2 cut(s)	178, 262
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	3 cut(s)	68, 222, 233
NlaIV	GGNNCC	2 cut(s)	111, 193
NmuCI	GTSAC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	102, 114
PleI	GAGTC	2 cut(s)	175, 248
PpsI	GAGTC	2 cut(s)	175, 248
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	111, 193
PspPI	GGNCC	1 cut(s)	264
PspPPI	RGGWCCY	1 cut(s)	264
PstNI	CAGNNNCTG	1 cut(s)	267
PsuI	RGATCY	2 cut(s)	222, 233
PvuII	CAGCTG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	101, 113
Sau3AI	GATC	3 cut(s)	68, 222, 233
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	175, 248
ScrFI	CCNGG	2 cut(s)	178, 262
SetI	ASST	5 cut(s)	93, 105, 144, 205, 269
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	2 cut(s)	27, 39
SsiI	CCGC	5 cut(s)	5, 64, 107, 113, 195
SspMI	CTAG	2 cut(s)	84, 159
StyD4I	CCNGG	2 cut(s)	176, 260
StyI	CCWWGG	1 cut(s)	210
TasI	AATT	2 cut(s)	27, 39
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	264
XspI	CTAG	2 cut(s)	84, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.