Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

77764122 .. 77766783

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG565400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTTTGGAGGGAGAAGAACGTTATAAAGCCAACACCAGGAAAGAGACGTTGTAACTGTAGAAATGAGGTCTATCACAGGCAAATCGGTCCGGGAATGTTCCAACAGATGACGGAACAGGTCTGCGAACAATGTAACAATGTTAAATATGAAAGGGAGGGATATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGATATTTAAAAGTACTGGATGCAAAGCCTCTTTTGAAGGAGGCCCTTCAAGCCGAGGGTAAACAAAAGGATGTACTTAAAGCTGCCGGTGCATTGTTTTCACATATTTGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

124

Amino Acids

14.19

Weight (kDa)

5.46

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
AclI	AACGTT	1 cut(s)	21
AfaI	GTAC	2 cut(s)	270, 330
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	292, 305
AjnI	CCWGG	2 cut(s)	37, 253
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	89, 298
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	194, 221, 239
BciT130I	CCWGG	2 cut(s)	39, 255
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	3 cut(s)	39, 93, 255
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 298
BmrFI	CCNGG	3 cut(s)	39, 93, 255
BmsI	GCATC	2 cut(s)	183, 265
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	39, 255
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	4 cut(s)	198, 232, 280, 331
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	92, 342
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	40
BsmBI	CGTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	39, 255
Bst4CI	ACNGT	2 cut(s)	59, 175
BstF5I	GGATG	4 cut(s)	198, 232, 280, 331
BstMAI	GTCTC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 344
BstNI	CCWGG	2 cut(s)	39, 255
BstSCI	CCNGG	3 cut(s)	37, 91, 253
BstSFI	CTRYAG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	4 cut(s)	198, 232, 280, 331
BtsIMutI	CAGTG	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	89, 298
CpoI	CGGWCCG	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	269, 329
CspI	CGGWCCG	1 cut(s)	89
CviJI	RGCY	5 cut(s)	31, 283, 299, 308, 338
CviKI_1	RGCY	5 cut(s)	31, 283, 299, 308, 338
CviQI	GTAC	2 cut(s)	269, 329
DraI	TTTAAA	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	37, 253
Esp3I	CGTCTC	1 cut(s)	40
FaiI	YATR	5 cut(s)	26, 150, 222, 239, 360
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	4 cut(s)	205, 239, 287, 338
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	92, 342
HpaII	CCGG	2 cut(s)	92, 342
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	233, 317
Hpy8I	GTNNAC	2 cut(s)	233, 317
HpyAV	CCTTC	2 cut(s)	286, 311
HpyCH4III	ACNGT	2 cut(s)	59, 175
HpyCH4IV	ACGT	2 cut(s)	21, 49
HpyCH4V	TGCA	3 cut(s)	196, 278, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 344
HpySE526I	ACGT	2 cut(s)	21, 49
LpnPI	CCDG	9 cut(s)	24, 51, 64, 104, 105, 240, 257, 267, 355
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	183, 265
MaeII	ACGT	2 cut(s)	21, 49
MaeIII	GTNAC	2 cut(s)	53, 134
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	9 cut(s)	3, 61, 151, 202, 217, 289, 294, 304, 361
MseI	TTAA	3 cut(s)	144, 263, 333
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	92, 342
MspR9I	CCNGG	3 cut(s)	39, 93, 255
MvaI	CCWGG	2 cut(s)	39, 255
MwoI	GCNNNNNNNGC	2 cut(s)	305, 344
NciI	CCSGG	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	340
PsiI	TTATAA	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	37, 253
PspGI	CCWGG	2 cut(s)	37, 253
PspPI	GGNCC	2 cut(s)	89, 298
RsaI	GTAC	2 cut(s)	270, 330
RsaNI	GTAC	2 cut(s)	269, 329
RseI	CAYNNNNRTG	1 cut(s)	363
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	144, 263, 333
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	2 cut(s)	89, 298
ScaI	AGTACT	1 cut(s)	270
ScrFI	CCNGG	3 cut(s)	39, 93, 255
SetI	ASST	8 cut(s)	24, 52, 72, 123, 213, 256, 340, 372
SfaNI	GCATC	2 cut(s)	183, 265
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	37, 91, 253
TaaI	ACNGT	2 cut(s)	59, 175
TaiI	ACGT	2 cut(s)	24, 52
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	240
TatI	WGTACW	2 cut(s)	268, 328
Tru1I	TTAA	3 cut(s)	144, 263, 333
Tru9I	TTAA	3 cut(s)	144, 263, 333
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	157, 165
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.