Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004720.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

30055 .. 33221

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004720.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgtttttggtttccaagaaaattgaaaatacaagtattgccttggataaatggcaacgtcctttctttggggataggcagaaggctatcaatgcaatccgtggtaggttagaggagctgttggggctgtctagctcaccggatttgcaggctgagaagaatgctttgttgaaaaggctagaagctttgctttcggaggaggagacttattggtgtcagagagctagagttgcatggctcaaggatggggacaggaatacaggtttctttcaccataaagcgtccaatagaaaacagaaaaattttatcaatggcttgcatgatgaggcaggtgattggtatgaggatgatgaagggttggaaaacattgtcgtgaattattttgagaatatgtataaagcaggagttgttgattctgttgcattggaggagactttacaggctatcactccttcagtcggatatttcccgacggtgagtttgaatttggaattggtgccgaagctggagtcggcgcttgggctttcgctgggaggctcggtgacggacatggcggtggtgatagcgacgacttcaattgagttaataattgggtttttggtggtgctgtggcggagatcgtctgataagactagtcaggtggtgaagcagctggtggtgccgcttaaggaggaggaagatgagtttgaggttgcatcgggcaagactaggactttggcaacagtgcctggattagcatgggttggctattctagtgcagcaacgcagttccattttgtggattggttgtggtattgtgcttctcatctgtcttctcaattatgggcaatttttgtccatactttgtggggaatatggagggaaaggaatgcaagggtatgggataataagcatacggtggtggccaatgttgtgatgcttctttctgtcaggtttcaggagtaccaacgtcaccatagatgggtgaaaataaattttgatggagcttatcatggggctactggtactggtgggattggagtgataattcgagatgatatggggcaatgcttgggtggttgttatgctccagtttctaatgtttcttctgctaagcaggttgaagctttggctgggagagaggtgtctcacttgctatttagcgaggcctttctcctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

386

Amino Acids

43.37

Weight (kDa)

5.92

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	320, 1087
AccB1I	GGYRCC	2 cut(s)	496, 658
AccB7I	CCANNNNNTGG	1 cut(s)	778
AciI	CCGC	3 cut(s)	554, 613, 662
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	3 cut(s)	301, 484, 973
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	944, 1006
AfiI	CCNNNNNNNGG	4 cut(s)	68, 458, 778, 961
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	5 cut(s)	26, 172, 484, 576, 1103
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	727
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	8 cut(s)	118, 135, 185, 224, 505, 652, 986, 1106
AluI	AGCT	8 cut(s)	118, 135, 185, 224, 505, 652, 986, 1106
Alw26I	GTCTC	3 cut(s)	197, 425, 1131
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	2 cut(s)	903, 1146
ApeKI	GCWGC	2 cut(s)	649, 758
ApoI	RAATTY	3 cut(s)	301, 484, 973
ArsI	GACNNNNNNTTYG	6 cut(s)	463, 494, 495, 526, 697, 729
AspLEI	GCGC	1 cut(s)	517
AsuHPI	GGTGA	9 cut(s)	129, 263, 344, 487, 553, 571, 655, 944, 976
BalI	TGGCCA	1 cut(s)	905
BanI	GGYRCC	2 cut(s)	496, 658
BbsI	GAAGAC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	661, 770
BccI	CCATC	3 cut(s)	239, 954, 974
BciT130I	CCWGG	1 cut(s)	729
BcoDI	GTCTC	3 cut(s)	197, 425, 1131
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	6 cut(s)	132, 179, 225, 633, 708, 753
BfoI	RGCGCY	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	665
BfuAI	ACCTGC	2 cut(s)	320, 1087
BisI	GCNGC	3 cut(s)	650, 662, 759
BlpI	GCTNAGC	1 cut(s)	1092
BlsI	GCNGC	3 cut(s)	651, 663, 760
Bme1390I	CCNGG	1 cut(s)	729
BmiI	GGNNCC	2 cut(s)	498, 660
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	2 cut(s)	704, 906
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	2 cut(s)	527, 1053
Bpu1102I	GCTNAGC	1 cut(s)	1092
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	42, 100
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 458, 778, 961
Bse1I	ACTGG	3 cut(s)	1006, 1012, 1070
Bse3DI	GCAATG	1 cut(s)	1052
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	2 cut(s)	42, 100
BseGI	GGATG	2 cut(s)	250, 352
BseLI	CCNNNNNNNGG	4 cut(s)	68, 458, 778, 961
BseMI	GCAATG	1 cut(s)	1052
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	3 cut(s)	1006, 1012, 1070
BseRI	GAGGAG	5 cut(s)	128, 212, 215, 443, 686
BseXI	GCAGC	2 cut(s)	661, 770
BseYI	CCCAGC	2 cut(s)	529, 1112
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	2 cut(s)	905, 1148
BshNI	GGYRCC	2 cut(s)	496, 658
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	4 cut(s)	68, 458, 778, 961
BsmAI	GTCTC	3 cut(s)	197, 425, 1131
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	2 cut(s)	166, 874
BsnI	GGCC	2 cut(s)	905, 1148
Bsp143I	GATC	1 cut(s)	617
Bsp1720I	GCTNAGC	1 cut(s)	1092
BspACI	CCGC	3 cut(s)	554, 613, 662
BspANI	GGCC	2 cut(s)	905, 1148
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	498, 660
BspMI	ACCTGC	2 cut(s)	320, 1087
BspT107I	GGYRCC	2 cut(s)	496, 658
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	1052
BsrI	ACTGG	3 cut(s)	1006, 1012, 1070
BssECI	CCNNGG	2 cut(s)	42, 100
BssMI	GATC	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	3 cut(s)	475, 724, 898
BstAFI	CTTAAG	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	150, 317
BstDEI	CTNAG	2 cut(s)	153, 1092
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	250, 352
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	1 cut(s)	620
BstMAI	GTCTC	3 cut(s)	197, 425, 1131
BstMBI	GATC	1 cut(s)	617
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 124, 230, 658
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	727
BstV1I	GCAGC	2 cut(s)	661, 770
BstV2I	GAAGAC	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	905, 1148
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	250, 352
BtsIMutI	CAGTG	1 cut(s)	729
BveI	ACCTGC	2 cut(s)	320, 1087
Cac8I	GCNNGC	2 cut(s)	150, 317
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	1 cut(s)	517
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	943, 1005
CviAII	CATG	5 cut(s)	234, 320, 550, 738, 992
CviQI	GTAC	2 cut(s)	943, 1005
DdeI	CTNAG	2 cut(s)	153, 1092
DpnI	GATC	1 cut(s)	619
DpnII	GATC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	903
EciI	GGCGGA	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	1148
Eco57I	CTGAAG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	5 cut(s)	237, 323, 553, 741, 995
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	5 cut(s)	233, 319, 549, 737, 991
Fnu4HI	GCNGC	3 cut(s)	650, 662, 759
FokI	GGATG	2 cut(s)	257, 359
Fsp4HI	GCNGC	3 cut(s)	650, 662, 759
FspBI	CTAG	6 cut(s)	132, 179, 225, 633, 708, 753
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	3 cut(s)	650, 662, 759
GsaI	CCCAGC	2 cut(s)	533, 1116
GsuI	CTGGAG	2 cut(s)	527, 1053
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	905, 1148
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	5 cut(s)	237, 323, 553, 741, 995
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HindIII	AAGCTT	2 cut(s)	183, 1104
HinfI	GANTC	2 cut(s)	413, 509
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	9 cut(s)	129, 263, 344, 487, 553, 571, 655, 944, 976
Hpy188I	TCNGA	4 cut(s)	196, 219, 461, 625
Hpy188III	TCNNGA	4 cut(s)	373, 469, 938, 1031
Hpy99I	CGWCG	2 cut(s)	475, 571
HpyAV	CCTTC	3 cut(s)	76, 347, 462
HpyCH4III	ACNGT	3 cut(s)	475, 724, 898
HpyCH4IV	ACGT	2 cut(s)	58, 949
HpyCH4V	TGCA	8 cut(s)	95, 148, 233, 319, 422, 695, 758, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 124, 230, 658
HpyF3I	CTNAG	2 cut(s)	153, 1092
HpySE526I	ACGT	2 cut(s)	58, 949
Hsp92II	CATG	5 cut(s)	237, 323, 553, 741, 995
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	1 cut(s)	617
LmnI	GCTCC	3 cut(s)	115, 983, 1072
Lsp1109I	GCAGC	2 cut(s)	661, 770
LweI	GCATC	2 cut(s)	704, 906
MaeI	CTAG	6 cut(s)	132, 179, 225, 633, 708, 753
MaeII	ACGT	2 cut(s)	58, 949
MaeIII	GTNAC	2 cut(s)	541, 950
MalI	GATC	1 cut(s)	619
MboI	GATC	1 cut(s)	617
MboII	GAAGA	4 cut(s)	169, 689, 804, 1077
MfeI	CAATTG	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	905
MluNI	TGGCCA	1 cut(s)	905
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	339, 439
Mox20I	TGGCCA	1 cut(s)	905
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	2 cut(s)	584, 666
MslI	CAYNNNNRTG	2 cut(s)	371, 554
Msp20I	TGGCCA	1 cut(s)	905
MspA1I	CMGCKG	1 cut(s)	652
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	166, 874
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	92, 124, 230, 658
NdeII	GATC	1 cut(s)	617
NlaIII	CATG	5 cut(s)	237, 323, 553, 741, 995
NlaIV	GGNNCC	2 cut(s)	498, 660
NmuCI	GTSAC	2 cut(s)	541, 950
PaqCI	CACCTGC	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	1148
PctI	GAATGC	2 cut(s)	166, 874
PfeI	GAWTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	778
PkrI	GCNGC	3 cut(s)	651, 663, 760
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	727
PspFI	CCCAGC	2 cut(s)	529, 1112
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	498, 660
PstNI	CAGNNNCTG	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	2 cut(s)	944, 1006
RsaNI	GTAC	2 cut(s)	943, 1005
RseI	CAYNNNNRTG	2 cut(s)	371, 554
SaqAI	TTAA	2 cut(s)	584, 666
SatI	GCNGC	3 cut(s)	650, 662, 759
Sau3AI	GATC	1 cut(s)	617
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	729
SfaNI	GCATC	2 cut(s)	704, 906
SmiMI	CAYNNNNRTG	2 cut(s)	371, 554
SmlI	CTYRAG	2 cut(s)	239, 665
SmoI	CTYRAG	2 cut(s)	239, 665
SpeI	ACTAGT	1 cut(s)	632
SseBI	AGGCCT	1 cut(s)	1148
SsiI	CCGC	3 cut(s)	554, 613, 662
SspMI	CTAG	6 cut(s)	132, 179, 225, 633, 708, 753
StuI	AGGCCT	1 cut(s)	1148
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	475, 724, 898
TaiI	ACGT	2 cut(s)	61, 952
TaqI	TCGA	1 cut(s)	1030
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	584, 666
Tru9I	TTAA	2 cut(s)	584, 666
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	2 cut(s)	541, 950
TseI	GCWGC	2 cut(s)	649, 758
Tsp45I	GTSAC	2 cut(s)	541, 950
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	2 cut(s)	89, 560
TspRI	CASTG	1 cut(s)	729
Van91I	CCANNNNNTGG	1 cut(s)	778
Vha464I	CTTAAG	1 cut(s)	665
XapI	RAATTY	3 cut(s)	301, 484, 973
XspI	CTAG	6 cut(s)	132, 179, 225, 633, 708, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.