RLG00000021410

belongs to the flavoprotein pyridine nucleotide cytochrome reductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
74983002 .. 74983821
820 bp
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UTR
Exon/CDS
Intron
RLM00000021410

Sequence Viewer

Length: 315 bp
ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGCTGCGGCGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCGTCGGGCAAGACTAGGGTGACTATTTTCTCTAGGACTCAGAGCGGCACCGCTGAAGGTGTTCTTTTCGATGTTGTAAACAGGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGGTAAATAACATTTATGCAGTTTATCTTGGTTACTTTATTGTGGTTTGA

Protein Analysis

105

Amino Acids

11.45

Weight (kDa)

9.52

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 109, 191
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 7 cut(s) 5, 61, 64, 107, 113, 189, 195
AclWI GGATC 2 cut(s) 244, 255
AcuI CTGAAG 1 cut(s) 219
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 27
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 2 cut(s) 244, 255
ApeKI GCWGC 2 cut(s) 58, 100
Asp700I GAANNNNTTC 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 22, 106, 175
BanI GGYRCC 2 cut(s) 109, 191
BbvI GCAGC 2 cut(s) 45, 112
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 84, 159, 177
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 5 cut(s) 59, 62, 101, 113, 190
BlsI GCNGC 5 cut(s) 60, 63, 102, 114, 191
BmiI GGNNCC 2 cut(s) 111, 193
BseMII CTCAG 2 cut(s) 197, 265
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 45, 112
BshNI GGYRCC 2 cut(s) 109, 191
Bsp143I GATC 3 cut(s) 68, 236, 247
BspACI CCGC 7 cut(s) 5, 61, 64, 107, 113, 189, 195
BspCNI CTCAG 2 cut(s) 196, 264
BspLI GGNNCC 2 cut(s) 111, 193
BspPI GGATC 2 cut(s) 244, 255
BspT107I GGYRCC 2 cut(s) 109, 191
BspTI CTTAAG 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 189
BssMI GATC 3 cut(s) 68, 236, 247
BstAFI CTTAAG 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 183, 251
BstKTI GATC 3 cut(s) 71, 239, 250
BstMBI GATC 3 cut(s) 68, 236, 247
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 45, 112
BstX2I RGATCY 2 cut(s) 236, 247
BstYI RGATCY 2 cut(s) 236, 247
Cac8I GCNNGC 1 cut(s) 105
CseI GACGC 1 cut(s) 135
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
DdeI CTNAG 2 cut(s) 183, 251
DpnI GATC 3 cut(s) 70, 238, 249
DpnII GATC 3 cut(s) 68, 236, 247
EciI GGCGGA 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 219
FaiI YATR 2 cut(s) 245, 282
FalI AAGNNNNNCTT 2 cut(s) 192, 224
Fnu4HI GCNGC 5 cut(s) 59, 62, 101, 113, 190
Fsp4HI GCNGC 5 cut(s) 59, 62, 101, 113, 190
FspBI CTAG 3 cut(s) 84, 159, 177
GluI GCNGC 5 cut(s) 59, 62, 101, 113, 190
HgaI GACGC 1 cut(s) 135
HinfI GANTC 1 cut(s) 181
HphI GGTGA 3 cut(s) 22, 106, 175
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 76, 186, 254
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 2 cut(s) 22, 151
HpyAV CCTTC 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 2 cut(s) 183, 251
Kzo9I GATC 3 cut(s) 68, 236, 247
LpnPI CCDG 3 cut(s) 89, 211, 225
Lsp1109I GCAGC 2 cut(s) 45, 112
MaeI CTAG 3 cut(s) 84, 159, 177
MaeIII GTNAC 2 cut(s) 163, 296
MalI GATC 3 cut(s) 70, 238, 249
MbiI CCGCTC 1 cut(s) 189
MboI GATC 3 cut(s) 68, 236, 247
MboII GAAGA 1 cut(s) 140
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 2 cut(s) 236, 247
MluCI AATT 2 cut(s) 27, 39
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 3 cut(s) 115, 118, 133
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 103, 197
MspCI CTTAAG 1 cut(s) 116
MunI CAATTG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 3 cut(s) 68, 236, 247
NlaIV GGNNCC 2 cut(s) 111, 193
NmuCI GTSAC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 204
PkrI GCNGC 5 cut(s) 60, 63, 102, 114, 191
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 111, 193
PsuI RGATCY 2 cut(s) 236, 247
PvuII CAGCTG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 5 cut(s) 59, 62, 101, 113, 190
Sau3AI GATC 3 cut(s) 68, 236, 247
SchI GAGTC 1 cut(s) 175
SetI ASST 3 cut(s) 105, 144, 205
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 2 cut(s) 27, 39
SsiI CCGC 7 cut(s) 5, 61, 64, 107, 113, 189, 195
SspMI CTAG 3 cut(s) 84, 159, 177
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 27, 39
TauI GCSGC 3 cut(s) 64, 115, 192
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 58, 100
Tsp45I GTSAC 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 3 cut(s) 84, 159, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.