Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

16858991 .. 16861026

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTTTGGAGGGAGAAGAACGTTATAAAGCCAACACCAGGAAAGAGACGTTGTAACTGTAGAAATGAGGTCTATCACAGGCAAATCGGTCCGGGAATGTTCCAACAGATGACGGAACAGGTCTGCGAACAATGTAACAATGTTAAATATGAAAGGGAGGGATATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAAGTCGTGTGGGGTTTCAAAGTTCTTGCAAATTCAGAGATTGGAGTTGTTGGCCTCCGCTATGCCCTGGAAGTGGCAAAACATGGATCTGTTGCTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTCAAGGTGGTGTTGGTGCTGTACTGTGCCCTTCGGATTTTGTGGAGAGTCATGTCCAGGACACCATTGTAGCAGGAGCTTATCTATGTGATGAGGAGACTGTCAGAGTATGTTATAGAACCAATTGTAAACAGGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGACTCTGCCAGGACCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

198

Amino Acids

22.41

Weight (kDa)

5.31

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	103 - 174	3.5e-10	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
AciI	CCGC	1 cut(s)	322
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	3 cut(s)	358, 554, 565
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	38, 337
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	5 cut(s)	37, 253, 330, 459, 584
AluBI	AGCT	1 cut(s)	482
AluI	AGCT	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	40, 494
AlwI	GGATC	3 cut(s)	358, 554, 565
AlwNI	CAGNNNCTG	1 cut(s)	591
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	89, 588
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	89, 588
BaeGI	GKGCMC	1 cut(s)	434
BccI	CCATC	3 cut(s)	194, 221, 239
BciT130I	CCWGG	5 cut(s)	39, 255, 332, 461, 586
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	40, 494
BfmI	CTRYAG	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	375
Bme1390I	CCNGG	6 cut(s)	39, 93, 255, 332, 461, 586
Bme18I	GGWCC	2 cut(s)	89, 588
BmgT120I	GGNCC	2 cut(s)	89, 588
BmrFI	CCNGG	6 cut(s)	39, 93, 255, 332, 461, 586
BmsI	GCATC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	330, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 337
BseBI	CCWGG	5 cut(s)	39, 255, 332, 461, 586
BseDI	CCNNGG	2 cut(s)	330, 369
BseGI	GGATG	2 cut(s)	198, 232
BseLI	CCNNNNNNNGG	2 cut(s)	38, 337
BseMII	CTCAG	2 cut(s)	366, 575
BseRI	GAGGAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	38, 337
BsmAI	GTCTC	2 cut(s)	40, 494
BsmBI	CGTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	350, 546, 557
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	367, 574
BspHI	TCATGA	1 cut(s)	382
BspPI	GGATC	3 cut(s)	358, 554, 565
BssECI	CCNNGG	2 cut(s)	330, 369
BssMI	GATC	3 cut(s)	350, 546, 557
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	5 cut(s)	39, 255, 332, 461, 586
Bst4CI	ACNGT	4 cut(s)	59, 175, 429, 505
BstDEI	CTNAG	2 cut(s)	375, 561
BstF5I	GGATG	2 cut(s)	198, 232
BstKTI	GATC	3 cut(s)	353, 549, 560
BstMAI	GTCTC	2 cut(s)	40, 494
BstMBI	GATC	3 cut(s)	350, 546, 557
BstNI	CCWGG	5 cut(s)	39, 255, 332, 461, 586
BstSCI	CCNGG	6 cut(s)	37, 91, 253, 330, 459, 584
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	434
BstX2I	RGATCY	3 cut(s)	350, 546, 557
BstYI	RGATCY	3 cut(s)	350, 546, 557
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	198, 232
BtsIMutI	CAGTG	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	591
CciI	TCATGA	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	89, 588
CpoI	CGGWCCG	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	425
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	3 cut(s)	347, 383, 455
CviJI	RGCY	5 cut(s)	31, 318, 374, 379, 482
CviKI_1	RGCY	5 cut(s)	31, 318, 374, 379, 482
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	2 cut(s)	375, 561
DpnI	GATC	3 cut(s)	352, 548, 559
DpnII	GATC	3 cut(s)	350, 546, 557
DraI	TTTAAA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	89, 588
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	5 cut(s)	37, 253, 330, 459, 584
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	3 cut(s)	350, 386, 458
FatI	CATG	3 cut(s)	346, 382, 454
FokI	GGATG	2 cut(s)	205, 239
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	3 cut(s)	350, 386, 458
HinfI	GANTC	2 cut(s)	451, 578
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	233, 533
Hpy188I	TCNGA	4 cut(s)	301, 439, 509, 564
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	233, 533
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	4 cut(s)	59, 175, 429, 505
HpyCH4IV	ACGT	2 cut(s)	21, 49
HpyCH4V	TGCA	2 cut(s)	196, 293
HpyF3I	CTNAG	2 cut(s)	375, 561
HpySE526I	ACGT	2 cut(s)	21, 49
Hsp92II	CATG	3 cut(s)	350, 386, 458
Kzo9I	GATC	3 cut(s)	350, 546, 557
LmnI	GCTCC	1 cut(s)	479
LweI	GCATC	1 cut(s)	183
MaeII	ACGT	2 cut(s)	21, 49
MaeIII	GTNAC	2 cut(s)	53, 134
MalI	GATC	3 cut(s)	352, 548, 559
MboI	GATC	3 cut(s)	350, 546, 557
MboII	GAAGA	1 cut(s)	28
MfeI	CAATTG	1 cut(s)	526
MflI	RGATCY	3 cut(s)	350, 546, 557
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	4 cut(s)	240, 295, 397, 526
MlyI	GAGTC	2 cut(s)	460, 572
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	3, 61, 151, 202, 217, 329, 390, 490
MseI	TTAA	2 cut(s)	144, 263
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	6 cut(s)	39, 93, 255, 332, 461, 586
MunI	CAATTG	1 cut(s)	526
MvaI	CCWGG	5 cut(s)	39, 255, 332, 461, 586
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	3 cut(s)	350, 546, 557
NlaIII	CATG	3 cut(s)	350, 386, 458
PagI	TCATGA	1 cut(s)	382
PfoI	TCCNGGA	2 cut(s)	91, 459
PleI	GAGTC	2 cut(s)	459, 572
PpsI	GAGTC	2 cut(s)	459, 572
PpuMI	RGGWCCY	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	588
Psp6I	CCWGG	5 cut(s)	37, 253, 330, 459, 584
PspGI	CCWGG	5 cut(s)	37, 253, 330, 459, 584
PspPI	GGNCC	2 cut(s)	89, 588
PspPPI	RGGWCCY	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	591
PsuI	RGATCY	3 cut(s)	350, 546, 557
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	144, 263
Sau3AI	GATC	3 cut(s)	350, 546, 557
Sau96I	GGNCC	2 cut(s)	89, 588
SchI	GAGTC	2 cut(s)	460, 572
ScrFI	CCNGG	6 cut(s)	39, 93, 255, 332, 461, 586
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	9 cut(s)	24, 52, 72, 123, 213, 256, 412, 484, 593
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	89, 588
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	4 cut(s)	240, 295, 397, 526
SsiI	CCGC	1 cut(s)	322
StyD4I	CCNGG	6 cut(s)	37, 91, 253, 330, 459, 584
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	4 cut(s)	59, 175, 429, 505
TaiI	ACGT	2 cut(s)	24, 52
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	4 cut(s)	240, 295, 397, 526
TatI	WGTACW	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	144, 263
Tru9I	TTAA	2 cut(s)	144, 263
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	157, 165, 399
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	89, 588
XapI	RAATTY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.