Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

53500513 .. 53503733

Gene Structure 3221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGGTAGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGCTGTGGTGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGTGTCGGGCAAGACTAGGGTGACTATTTTCTCTGGGACTCAGATCGGCACTGCTGAAGGTTTCGCCAAGGTTGACCTTGCTAAATTTTACTGTTCCTGTGTTTTACTTGTTTCAATTCCAATTTTTGCTATCGAATTAGGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGGTGTGTGAAGACTCGGCCAGGACCTGTTAGGAGAGGCAACAATATCTTGGTACTGGATGCAAAGCCTCTTTTGAAGGAGGCCCTTCATGCCGAAGTTGGACTGCCAGTGGACAGGGACATCCCATTAATAGGCTTCATTGGTAGGCTAGAGGAGCAGAAAGGTTCAGATATTCTAGTGGAAGCCATTCCAGAATTGGCAGAAGAGAATTTGCAAATAATAATCCTTGTTCTTACCGAGAGTAAACAAAAAGATGTACTTAAAGCTGCTGGTGCATTGTTTTCACATATTTATGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000271 GO:0003674 GO:0003824 GO:0004373 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009569 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017076 GO:0019252 GO:0019863 GO:0019865 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0036094 GO:0043036 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043531 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046527 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

208

Amino Acids

22.69

Weight (kDa)

5.1

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	3 cut(s)	5, 107, 113
AclWI	GGATC	2 cut(s)	300, 311
AcoI	YGGCCR	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	227, 529
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	375, 579
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	27, 258, 397
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	103, 587
AluI	AGCT	2 cut(s)	103, 587
AlwI	GGATC	2 cut(s)	300, 311
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	338, 402
ApeKI	GCWGC	2 cut(s)	100, 587
ApoI	RAATTY	2 cut(s)	227, 529
AseI	ATTAAT	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	344, 403
AsuHPI	GGTGA	2 cut(s)	106, 175
AvaII	GGWCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	112, 574
BciT130I	CCWGG	1 cut(s)	342
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	4 cut(s)	84, 159, 470, 497
BfrI	CTTAAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	101, 113, 588
BlsI	GCNGC	3 cut(s)	102, 114, 589
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	344, 403
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	381, 428
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	385, 441
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	197, 321
BseNI	ACTGG	2 cut(s)	381, 428
BseRI	GAGGAG	2 cut(s)	137, 488
BseXI	GCAGC	2 cut(s)	112, 574
BshFI	GGCC	2 cut(s)	340, 404
BshNI	GGYRCC	1 cut(s)	109
BslFI	GGGAC	2 cut(s)	193, 452
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmFI	GGGAC	2 cut(s)	193, 452
BsnI	GGCC	2 cut(s)	340, 404
Bsp143I	GATC	4 cut(s)	68, 186, 292, 303
BspACI	CCGC	3 cut(s)	5, 107, 113
BspANI	GGCC	2 cut(s)	340, 404
BspCNI	CTCAG	2 cut(s)	196, 320
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	2 cut(s)	300, 311
BspT107I	GGYRCC	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	381, 428
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	68, 186, 292, 303
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	519
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	183, 307
BstF5I	GGATG	2 cut(s)	385, 441
BstKTI	GATC	4 cut(s)	71, 189, 295, 306
BstMBI	GATC	4 cut(s)	68, 186, 292, 303
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 410, 475, 593
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	112, 574
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	292, 303
BstYI	RGATCY	2 cut(s)	292, 303
BsuRI	GGCC	2 cut(s)	340, 404
BtsCI	GGATG	2 cut(s)	385, 441
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 435
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	344, 403
Csp6I	GTAC	2 cut(s)	374, 578
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	8 cut(s)	103, 340, 388, 404, 456, 469, 506, 587
CviKI_1	RGCY	8 cut(s)	103, 340, 388, 404, 456, 469, 506, 587
CviQI	GTAC	2 cut(s)	374, 578
DdeI	CTNAG	2 cut(s)	183, 307
DpnI	GATC	4 cut(s)	70, 188, 294, 305
DpnII	GATC	4 cut(s)	68, 186, 292, 303
EaeI	YGGCCR	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	344, 403
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	413
FaiI	YATR	4 cut(s)	301, 411, 609, 615
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	2 cut(s)	193, 452
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	101, 113, 588
FokI	GGATG	2 cut(s)	392, 428
Fsp4HI	GCNGC	3 cut(s)	101, 113, 588
FspBI	CTAG	4 cut(s)	84, 159, 470, 497
GluI	GCNGC	3 cut(s)	101, 113, 588
HaeIII	GGCC	2 cut(s)	340, 404
Hin1II	CATG	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	181, 334
HphI	GGTGA	2 cut(s)	106, 175
Hpy166II	GTNNAC	3 cut(s)	217, 433, 566
Hpy188I	TCNGA	4 cut(s)	76, 186, 310, 490
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	3 cut(s)	217, 433, 566
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	194, 391, 416
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	3 cut(s)	383, 535, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 410, 475, 593
HpyF3I	CTNAG	2 cut(s)	183, 307
Hsp92II	CATG	1 cut(s)	413
Kzo9I	GATC	4 cut(s)	68, 186, 292, 303
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	2 cut(s)	112, 574
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	4 cut(s)	84, 159, 470, 497
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	4 cut(s)	70, 188, 294, 305
MboI	GATC	4 cut(s)	68, 186, 292, 303
MboII	GAAGA	3 cut(s)	140, 343, 536
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	2 cut(s)	292, 303
MluCI	AATT	8 cut(s)	27, 39, 227, 258, 264, 278, 515, 529
MlyI	GAGTC	2 cut(s)	175, 328
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	115, 118, 133, 350, 394, 399, 466, 610
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	3 cut(s)	117, 449, 582
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	103
MspCI	CTTAAG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	109, 410, 475, 593
NdeII	GATC	4 cut(s)	68, 186, 292, 303
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	102, 114, 589
PleI	GAGTC	2 cut(s)	175, 328
PpsI	GAGTC	2 cut(s)	175, 328
PpuMI	RGGWCCY	1 cut(s)	344
PshBI	ATTAAT	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	2 cut(s)	344, 403
PspPPI	RGGWCCY	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	292, 303
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	375, 579
RsaNI	GTAC	2 cut(s)	374, 578
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	3 cut(s)	117, 449, 582
SatI	GCNGC	3 cut(s)	101, 113, 588
Sau3AI	GATC	4 cut(s)	68, 186, 292, 303
Sau96I	GGNCC	2 cut(s)	344, 403
SchI	GAGTC	2 cut(s)	175, 328
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	9 cut(s)	105, 144, 205, 216, 222, 349, 487, 589, 621
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	8 cut(s)	27, 39, 227, 258, 264, 278, 515, 529
SsiI	CCGC	3 cut(s)	5, 107, 113
SspMI	CTAG	4 cut(s)	84, 159, 470, 497
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	276
TasI	AATT	8 cut(s)	27, 39, 227, 258, 264, 278, 515, 529
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	117, 449, 582
Tru9I	TTAA	3 cut(s)	117, 449, 582
TscAI	CASTG	2 cut(s)	199, 435
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	100, 587
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	398, 448
TspRI	CASTG	2 cut(s)	199, 435
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	449
XapI	RAATTY	2 cut(s)	227, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	4 cut(s)	84, 159, 470, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.