Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

15382070 .. 15391253

Gene Structure 9184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATATTTGGGTTTCTGGTGGTGCTGTGGCAGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCATCGGGCAAGACTAGGGTTTGGAGGGAGAAGAACGTTATAAAGCCAACACCAGGAAAGAGACGTTGTAACTATAGAAATGAGGACTATCACAGGCAAATCGGTCAGGGAATGTTCCAACAGATGACGGAACAGGAGGTGGTTTTCTATGAGGATGATGAACCCATAATTGATGGAGAACCTGGAGATTTAAAAAGATGTAACTCCTCCCAATCTCCAATTAATGAGAGCTCAAAGCCCTTAAGAACCATCACTTCATCAAGTTTGCGAGATGGTTCCACTAAATTCTTCGATTTTACTGTTATTGGTAGTGGAGTTGCTAGCCTCCGCTATGCCCTGGAAGTGGCAAAACATGGATCTGTTGTTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTAAAGGTGGTGTTGGTGCTGTACTGTGCCCTTCGGATTCTGTGGAGAGTCATGTCCAGGACACCATTGTAGCAGGAGCTTATCTATGTGATGAGGAGACTGTCAGACTCAACGTTATCAATTATATGCTTCTTCCTCAGCGCTATGGCTCTGCGCTTCAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

239

Amino Acids

26.61

Weight (kDa)

5.51

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	147 - 222	3.3e-14	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	4 cut(s)	5, 107, 113, 472
AclI	AACGTT	2 cut(s)	180, 666
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	1 cut(s)	576
AfeI	AGCGCT	1 cut(s)	695
AfiI	CCNNNNNNNGG	2 cut(s)	197, 487
AflII	CTTAAG	2 cut(s)	116, 385
AgsI	TTSAA	2 cut(s)	27, 713
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	4 cut(s)	196, 325, 480, 609
AluBI	AGCT	3 cut(s)	103, 375, 632
AluI	AGCT	3 cut(s)	103, 375, 632
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	2 cut(s)	199, 644
AlwI	GGATC	1 cut(s)	508
Aor51HI	AGCGCT	1 cut(s)	695
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	428
AseI	ATTAAT	1 cut(s)	366
AspLEI	GCGC	2 cut(s)	696, 709
AsuHPI	GGTGA	2 cut(s)	22, 106
AsuNHI	GCTAGC	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	377
BbvCI	CCTCAGC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	3 cut(s)	311, 401, 410
BciT130I	CCWGG	4 cut(s)	198, 327, 482, 611
BcoDI	GTCTC	2 cut(s)	199, 644
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	4 cut(s)	84, 159, 465, 718
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	697
BfrI	CTTAAG	2 cut(s)	116, 385
BisI	GCNGC	2 cut(s)	101, 113
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	2 cut(s)	102, 114
Bme1390I	CCNGG	4 cut(s)	198, 327, 482, 611
BmiI	GGNNCC	2 cut(s)	111, 421
BmrFI	CCNGG	4 cut(s)	198, 327, 482, 611
BmsI	GCATC	1 cut(s)	155
BmtI	GCTAGC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	480, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 487
BseBI	CCWGG	4 cut(s)	198, 327, 482, 611
BseDI	CCNNGG	2 cut(s)	480, 519
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	197, 487
BseMII	CTCAG	2 cut(s)	516, 704
BseRI	GAGGAG	3 cut(s)	137, 340, 662
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	197, 487
BsmAI	GTCTC	2 cut(s)	199, 644
BsmBI	CGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	377, 584
Bsp143I	GATC	2 cut(s)	68, 500
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	4 cut(s)	5, 107, 113, 472
BspCNI	CTCAG	2 cut(s)	517, 703
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	111, 421
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	109
BspTI	CTTAAG	2 cut(s)	116, 385
BssECI	CCNNGG	2 cut(s)	480, 519
BssMI	GATC	2 cut(s)	68, 500
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	4 cut(s)	198, 327, 482, 611
Bst4CI	ACNGT	3 cut(s)	445, 579, 655
BstAFI	CTTAAG	2 cut(s)	116, 385
BstC8I	GCNNGC	2 cut(s)	105, 466
BstDEI	CTNAG	2 cut(s)	525, 690
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	2 cut(s)	696, 709
BstKTI	GATC	2 cut(s)	71, 503
BstMAI	GTCTC	2 cut(s)	199, 644
BstMBI	GATC	2 cut(s)	68, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	4 cut(s)	198, 327, 482, 611
BstSCI	CCNGG	4 cut(s)	196, 325, 480, 609
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	584
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	105, 466
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	2 cut(s)	696, 709
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	3 cut(s)	497, 533, 605
CviJI	RGCY	9 cut(s)	103, 190, 375, 382, 468, 524, 529, 632, 702
CviKI_1	RGCY	9 cut(s)	103, 190, 375, 382, 468, 524, 529, 632, 702
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	2 cut(s)	525, 690
DpnI	GATC	2 cut(s)	70, 502
DpnII	GATC	2 cut(s)	68, 500
DraI	TTTAAA	1 cut(s)	336
Ecl136II	GAGCTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	695
Eco53kI	GAGCTC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	375
EcoRII	CCWGG	4 cut(s)	196, 325, 480, 609
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	3 cut(s)	500, 536, 608
FatI	CATG	3 cut(s)	496, 532, 604
Fnu4HI	GCNGC	2 cut(s)	101, 113
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	101, 113
FspBI	CTAG	4 cut(s)	84, 159, 465, 718
GlaI	GCGC	2 cut(s)	695, 708
GluI	GCNGC	2 cut(s)	101, 113
GsuI	CTGGAG	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	697
HhaI	GCGC	2 cut(s)	696, 709
Hin1II	CATG	3 cut(s)	500, 536, 608
Hin6I	GCGC	2 cut(s)	694, 707
HinP1I	GCGC	2 cut(s)	694, 707
HinfI	GANTC	3 cut(s)	590, 601, 660
HphI	GGTGA	2 cut(s)	22, 106
Hpy188I	TCNGA	3 cut(s)	76, 589, 659
Hpy188III	TCNNGA	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	3 cut(s)	445, 579, 655
HpyCH4IV	ACGT	3 cut(s)	180, 208, 666
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	525, 690
HpySE526I	ACGT	3 cut(s)	180, 208, 666
Hsp92II	CATG	3 cut(s)	500, 536, 608
HspAI	GCGC	2 cut(s)	694, 707
Kzo9I	GATC	2 cut(s)	68, 500
LmnI	GCTCC	1 cut(s)	629
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	4 cut(s)	84, 159, 465, 718
MaeII	ACGT	3 cut(s)	180, 208, 666
MaeIII	GTNAC	2 cut(s)	212, 344
MalI	GATC	2 cut(s)	70, 502
MboI	GATC	2 cut(s)	68, 500
MboII	GAAGA	4 cut(s)	140, 187, 424, 677
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	377, 584
MluCI	AATT	6 cut(s)	27, 312, 363, 428, 547, 673
MlyI	GAGTC	2 cut(s)	610, 654
MmeI	TCCRAC	1 cut(s)	286
MseI	TTAA	4 cut(s)	117, 335, 366, 386
MspA1I	CMGCKG	1 cut(s)	103
MspCI	CTTAAG	2 cut(s)	116, 385
MspR9I	CCNGG	4 cut(s)	198, 327, 482, 611
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	4 cut(s)	198, 327, 482, 611
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	2 cut(s)	68, 500
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	3 cut(s)	500, 536, 608
NlaIV	GGNNCC	2 cut(s)	111, 421
PagI	TCATGA	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	2 cut(s)	102, 114
PleI	GAGTC	2 cut(s)	609, 654
PpsI	GAGTC	2 cut(s)	609, 654
PshBI	ATTAAT	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	377
Psp1406I	AACGTT	2 cut(s)	180, 666
Psp6I	CCWGG	4 cut(s)	196, 325, 480, 609
PspGI	CCWGG	4 cut(s)	196, 325, 480, 609
PspN4I	GGNNCC	2 cut(s)	111, 421
PsuI	RGATCY	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	377
SaqAI	TTAA	4 cut(s)	117, 335, 366, 386
SatI	GCNGC	2 cut(s)	101, 113
Sau3AI	GATC	2 cut(s)	68, 500
SchI	GAGTC	2 cut(s)	610, 654
ScrFI	CCNGG	4 cut(s)	198, 327, 482, 611
SduI	GDGCHC	2 cut(s)	377, 584
SfaNI	GCATC	1 cut(s)	155
SfcI	CTRYAG	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	116, 385
SmoI	CTYRAG	2 cut(s)	116, 385
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	6 cut(s)	27, 312, 363, 428, 547, 673
SsiI	CCGC	4 cut(s)	5, 107, 113, 472
SspMI	CTAG	4 cut(s)	84, 159, 465, 718
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	4 cut(s)	196, 325, 480, 609
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	445, 579, 655
TaiI	ACGT	3 cut(s)	183, 211, 669
TaqI	TCGA	1 cut(s)	435
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	6 cut(s)	27, 312, 363, 428, 547, 673
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	4 cut(s)	117, 335, 366, 386
Tru9I	TTAA	4 cut(s)	117, 335, 366, 386
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	318, 390, 549
TspGWI	ACGGA	1 cut(s)	287
Vha464I	CTTAAG	2 cut(s)	116, 385
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	1 cut(s)	428
XspI	CTAG	4 cut(s)	84, 159, 465, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.