Rorug03G0288000

Catalyzes the oxidation of L-aspartate to iminoaspartate

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
29251241 .. 29252078
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0288000.1

Sequence Viewer

Length: 591 bp
ATGGCAGATCAGTTCAGAACAGTTGAGATCAGATCTCGTCGTCGTTCTGTTCAAGGTATGGAGGAGTTGTGTTATTTTGACAAGGTCAAGCAAAGAAGCCAGGGCATTGGGGAGAACAAGCTTCTCATCGTACTAGAGTTTTTCAGGGTAAGAGGCGTCGAACTTAGCAGTAGGCTGCCAATTTCTGTTGAAGAATATTCTAAAATAGCTGAAAAACGTATTGGAGTCCGCTTTTCACATATAAAGCAATTGTCGTCATCATCATCATTCAATGAAAATGTGTATGCACGAAAATTATCTGAATCTCTTTCAAGCATGGGTGTCCCGCACGATTTACACCAGGGTATTCTTCAAAAGTTGTTTGCGGCGGTTGTGGCGGCCGTCTCCGCCAACACTATTGTTGTGGGTGTGTGGGAGTACACCACTCACCTCATTGGTGTTGGCGTTGATGCTGATGGAGATGTATATGGAGGAGATGGAGAGGGAGATTGGCTGGAGTTCAGCCACCTATGTCCTCTCTGCCGATACCCAATGCCAACCGAAGATGATCGGTCAAATTGTGGAGGGAGCGAAGCCAGCATTGCTCGTTGA

Protein Analysis

196

Amino Acids

21.82

Weight (kDa)

5.98

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 229, 326, 365, 368, 377, 387
AcoI YGGCCR 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 2 cut(s) 132, 419
AgsI TTSAA 5 cut(s) 53, 191, 271, 312, 353
AjnI CCWGG 2 cut(s) 99, 339
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 2 cut(s) 121, 209
AluI AGCT 2 cut(s) 121, 209
Alw26I GTCTC 1 cut(s) 388
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 419
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 449, 470
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 2 cut(s) 101, 341
BcoDI GTCTC 1 cut(s) 388
BfaI CTAG 1 cut(s) 134
BglII AGATCT 1 cut(s) 32
BisI GCNGC 3 cut(s) 176, 366, 378
BlsI GCNGC 3 cut(s) 177, 367, 379
Bme1390I CCNGG 2 cut(s) 101, 341
BmrFI CCNGG 2 cut(s) 101, 341
BmsI GCATC 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 100, 340
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 101, 341
BseDI CCNNGG 2 cut(s) 100, 340
BseMI GCAATG 1 cut(s) 579
BseRI GAGGAG 2 cut(s) 77, 486
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 388
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 380
Bsp143I GATC 4 cut(s) 7, 27, 32, 547
BspACI CCGC 6 cut(s) 229, 326, 365, 368, 377, 387
BspANI GGCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 579
BssECI CCNNGG 2 cut(s) 100, 340
BssMI GATC 4 cut(s) 7, 27, 32, 547
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 101, 341
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 577
BstDEI CTNAG 1 cut(s) 164
BstKTI GATC 4 cut(s) 10, 30, 35, 550
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 4 cut(s) 7, 27, 32, 547
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 374, 386, 576, 581
BstNI CCWGG 2 cut(s) 101, 341
BstSCI CCNGG 2 cut(s) 99, 339
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 32
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 1 cut(s) 380
Cac8I GCNNGC 1 cut(s) 577
CseI GACGC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 131, 418
CviAII CATG 1 cut(s) 316
CviJI RGCY 8 cut(s) 99, 121, 175, 209, 380, 493, 504, 575
CviKI_1 RGCY 8 cut(s) 99, 121, 175, 209, 380, 493, 504, 575
CviQI GTAC 2 cut(s) 131, 418
DdeI CTNAG 1 cut(s) 164
DpnI GATC 4 cut(s) 9, 29, 34, 549
DpnII GATC 4 cut(s) 7, 27, 32, 547
EaeI YGGCCR 1 cut(s) 378
EagI CGGCCG 1 cut(s) 378
EciI GGCGGA 1 cut(s) 376
EclXI CGGCCG 1 cut(s) 378
Eco52I CGGCCG 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 99, 339
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 1 cut(s) 319
FaiI YATR 8 cut(s) 59, 240, 242, 285, 317, 466, 468, 511
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 315
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 176, 366, 378
Fsp4HI GCNGC 3 cut(s) 176, 366, 378
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 176, 366, 378
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 1 cut(s) 380
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 225, 302
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 3 cut(s) 17, 32, 301
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 3 cut(s) 42, 45, 161
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 386, 576, 581
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 4 cut(s) 7, 27, 32, 547
LmnI GCTCC 1 cut(s) 567
LpnPI CCDG 6 cut(s) 86, 113, 130, 326, 353, 479
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 439
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 217
MalI GATC 4 cut(s) 9, 29, 34, 549
MboI GATC 4 cut(s) 7, 27, 32, 547
MboII GAAGA 3 cut(s) 203, 341, 554
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 1 cut(s) 32
MluCI AATT 4 cut(s) 180, 248, 293, 556
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 7 cut(s) 55, 146, 440, 464, 475, 525, 557
MspR9I CCNGG 2 cut(s) 101, 341
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 2 cut(s) 101, 341
MwoI GCNNNNNNNGC 4 cut(s) 374, 386, 576, 581
NdeII GATC 4 cut(s) 7, 27, 32, 547
NlaIII CATG 1 cut(s) 319
PfeI GAWTC 1 cut(s) 302
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 177, 367, 379
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 99, 339
PspGI CCWGG 2 cut(s) 99, 339
PsuI RGATCY 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 2 cut(s) 132, 419
RsaNI GTAC 2 cut(s) 131, 418
SatI GCNGC 3 cut(s) 176, 366, 378
Sau3AI GATC 4 cut(s) 7, 27, 32, 547
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 2 cut(s) 101, 341
SetI ASST 7 cut(s) 58, 87, 123, 211, 220, 432, 510
SfaNI GCATC 1 cut(s) 439
Sse9I AATT 4 cut(s) 180, 248, 293, 556
SsiI CCGC 6 cut(s) 229, 326, 365, 368, 377, 387
SspI AATATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 99, 339
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 159
TaqII GACCGA 1 cut(s) 540
TasI AATT 4 cut(s) 180, 248, 293, 556
TatI WGTACW 1 cut(s) 417
TauI GCSGC 2 cut(s) 368, 380
TfiI GAWTC 1 cut(s) 302
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 83
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.