Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000657.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

20940 .. 25615

Gene Structure 4676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000657.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ctgtggcggagatcgtctgataagactagtagggtggtgaagcagctggcggtgccgcttaaggaggaggaagatgagtttgaggttgcgtcaggaaagactagggtgactattttctctgggactcagaccggcaccgctgaagaaggagcaatgacaacttgtataccagctggaactggtaaactgcatttcagagtaagggacttcaacgcacaaggctgtagaaaggcttcttgggtcacatttagtgagctttcatggtcgtgtggggtttcaaagttcttgcaaattcagagatgtaactcctcccaatctccaattaatgagagctcaaagcccttaagaaccatcacttcatcaaatttgcgagatggttccactaaattcttcgattttactgttattggtagtggagttgctggcctctgctatgccctggaagtggcaaaacatggatctgttgctgtcattaccaaggctgagcctcatgaaagtaatacaaattatgctcaaggtggtgttggtgctgtactgtgcccttcggattctgtggagagtcatgtccaggacaccattgtagcaggagcttatctatgtgatgaggagactatcagagtactggatacaaagcctcttttgaaggaggcccttcaagccgagggtaaacaaaaggatgtacttaaagctgccggtgcattgttttcacatgttacccggatgctagtgccggagtttggtggtcatcggaggaagtggccgccggcgcgtggtccccacgcgccgccactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

264

Amino Acids

28.59

Weight (kDa)

8.66

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	52, 134
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	2 cut(s)	769, 782
AciI	CCGC	6 cut(s)	7, 50, 56, 138, 761, 785
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	758
AcsI	RAATTY	3 cut(s)	291, 364, 386
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	3 cut(s)	534, 621, 681
AfiI	CCNNNNNNNGG	3 cut(s)	445, 737, 770
AflII	CTTAAG	2 cut(s)	59, 343
AflIII	ACRYGT	1 cut(s)	709
AgsI	TTSAA	4 cut(s)	211, 279, 643, 656
AhlI	ACTAGT	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	438, 567
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	6 cut(s)	46, 173, 256, 333, 590, 689
AluI	AGCT	6 cut(s)	46, 173, 256, 333, 590, 689
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	1 cut(s)	466
AoxI	GGCC	3 cut(s)	424, 648, 758
ApeKI	GCWGC	2 cut(s)	43, 689
ApoI	RAATTY	3 cut(s)	291, 364, 386
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	232
AspLEI	GCGC	2 cut(s)	769, 784
AspS9I	GGNCC	2 cut(s)	649, 773
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	2 cut(s)	49, 118
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	52, 134
BanII	GRGCYC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	55, 676
BccI	CCATC	2 cut(s)	359, 368
BciT130I	CCWGG	2 cut(s)	440, 569
BciVI	GTATCC	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	602
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	3 cut(s)	27, 102, 725
BfmI	CTRYAG	2 cut(s)	223, 791
BfrI	CTTAAG	2 cut(s)	59, 343
BfuI	GTATCC	1 cut(s)	619
BisI	GCNGC	5 cut(s)	44, 56, 690, 761, 785
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	5 cut(s)	45, 57, 691, 762, 786
BmcAI	AGTACT	1 cut(s)	621
Bme1390I	CCNGG	3 cut(s)	440, 569, 718
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	649, 773
BmiI	GGNNCC	4 cut(s)	54, 136, 379, 775
BmrFI	CCNGG	3 cut(s)	440, 569, 718
BmsI	GCATC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	718
BsaJI	CCNNGG	3 cut(s)	438, 477, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 737, 770
Bse118I	RCCGGY	3 cut(s)	131, 692, 763
Bse1I	ACTGG	2 cut(s)	184, 627
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	440, 569
BseDI	CCNNGG	3 cut(s)	438, 477, 660
BseGI	GGATG	2 cut(s)	682, 726
BseLI	CCNNNNNNNGG	3 cut(s)	445, 737, 770
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	140, 474
BseNI	ACTGG	2 cut(s)	184, 627
BseRI	GAGGAG	3 cut(s)	80, 298, 620
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	55, 676
Bsh1236I	CGCG	2 cut(s)	769, 782
BshFI	GGCC	3 cut(s)	426, 650, 760
BshNI	GGYRCC	2 cut(s)	52, 134
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	5 cut(s)	132, 693, 718, 731, 764
BslFI	GGGAC	3 cut(s)	136, 218, 759
BslI	CCNNNNNNNGG	3 cut(s)	445, 737, 770
BsmAI	GTCTC	1 cut(s)	602
BsmFI	GGGAC	3 cut(s)	136, 218, 759
BsnI	GGCC	3 cut(s)	426, 650, 760
Bsp1286I	GDGCHC	2 cut(s)	335, 542
Bsp143I	GATC	2 cut(s)	11, 458
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	6 cut(s)	7, 50, 56, 138, 761, 785
BspANI	GGCC	3 cut(s)	426, 650, 760
BspCNI	CTCAG	2 cut(s)	139, 475
BspFNI	CGCG	2 cut(s)	769, 782
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	4 cut(s)	54, 136, 379, 775
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	2 cut(s)	52, 134
BspTI	CTTAAG	2 cut(s)	59, 343
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	3 cut(s)	131, 692, 763
BsrI	ACTGG	2 cut(s)	184, 627
BssAI	RCCGGY	3 cut(s)	131, 692, 763
BssECI	CCNNGG	3 cut(s)	438, 477, 660
BssMI	GATC	2 cut(s)	11, 458
BssNAI	GTATAC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	440, 569
Bst4CI	ACNGT	3 cut(s)	403, 537, 792
BstAFI	CTTAAG	2 cut(s)	59, 343
BstC8I	GCNNGC	3 cut(s)	48, 424, 765
BstDEI	CTNAG	2 cut(s)	126, 483
BstF5I	GGATG	2 cut(s)	682, 726
BstFNI	CGCG	2 cut(s)	769, 782
BstHHI	GCGC	2 cut(s)	769, 784
BstKTI	GATC	2 cut(s)	14, 461
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	2 cut(s)	11, 458
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 656, 695, 766
BstNI	CCWGG	2 cut(s)	440, 569
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	3 cut(s)	438, 567, 716
BstSFI	CTRYAG	2 cut(s)	223, 791
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	2 cut(s)	769, 782
BstV1I	GCAGC	2 cut(s)	55, 676
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BstZ17I	GTATAC	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	426, 650, 760
BtsCI	GGATG	2 cut(s)	682, 726
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	3 cut(s)	48, 424, 765
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	2 cut(s)	769, 784
Cfr10I	RCCGGY	3 cut(s)	131, 692, 763
Cfr13I	GGNCC	2 cut(s)	649, 773
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	533, 620, 680
CviAII	CATG	5 cut(s)	261, 455, 491, 563, 710
CviQI	GTAC	3 cut(s)	533, 620, 680
DdeI	CTNAG	2 cut(s)	126, 483
DpnI	GATC	2 cut(s)	13, 460
DpnII	GATC	2 cut(s)	11, 458
EaeI	YGGCCR	1 cut(s)	758
EciI	GGCGGA	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	773
Eco53kI	GAGCTC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	438, 567
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	5 cut(s)	264, 458, 494, 566, 713
FaiI	YATR	9 cut(s)	167, 262, 435, 456, 492, 510, 564, 598, 711
FaqI	GGGAC	3 cut(s)	136, 218, 759
FatI	CATG	5 cut(s)	260, 454, 490, 562, 709
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	44, 56, 690, 761, 785
FokI	GGATG	2 cut(s)	689, 733
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	5 cut(s)	44, 56, 690, 761, 785
FspBI	CTAG	3 cut(s)	27, 102, 725
GlaI	GCGC	2 cut(s)	768, 783
GluI	GCNGC	5 cut(s)	44, 56, 690, 761, 785
HaeIII	GGCC	3 cut(s)	426, 650, 760
HapII	CCGG	5 cut(s)	132, 693, 718, 731, 764
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	2 cut(s)	769, 784
Hin1II	CATG	5 cut(s)	264, 458, 494, 566, 713
Hin6I	GCGC	2 cut(s)	767, 782
HinP1I	GCGC	2 cut(s)	767, 782
HinfI	GANTC	3 cut(s)	124, 548, 559
HpaII	CCGG	5 cut(s)	132, 693, 718, 731, 764
HphI	GGTGA	2 cut(s)	49, 118
Hpy166II	GTNNAC	3 cut(s)	167, 185, 668
Hpy188I	TCNGA	7 cut(s)	19, 129, 197, 297, 547, 617, 750
Hpy188III	TCNNGA	2 cut(s)	93, 491
Hpy8I	GTNNAC	3 cut(s)	167, 185, 668
HpyAV	CCTTC	4 cut(s)	140, 552, 637, 662
HpyCH4III	ACNGT	3 cut(s)	403, 537, 792
HpyCH4V	TGCA	3 cut(s)	190, 289, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 656, 695, 766
HpyF3I	CTNAG	2 cut(s)	126, 483
Hsp92II	CATG	5 cut(s)	264, 458, 494, 566, 713
HspAI	GCGC	2 cut(s)	767, 782
KroI	GCCGGC	1 cut(s)	763
KroNI	GCCGGC	1 cut(s)	765
Kzo9I	GATC	2 cut(s)	11, 458
LmnI	GCTCC	2 cut(s)	149, 587
Lsp1109I	GCAGC	2 cut(s)	55, 676
LweI	GCATC	1 cut(s)	711
MaeI	CTAG	3 cut(s)	27, 102, 725
MaeIII	GTNAC	4 cut(s)	106, 241, 302, 712
MalI	GATC	2 cut(s)	13, 460
MboI	GATC	2 cut(s)	11, 458
MboII	GAAGA	3 cut(s)	83, 155, 382
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	335, 542
MluCI	AATT	5 cut(s)	291, 321, 364, 386, 505
MlyI	GAGTC	2 cut(s)	118, 568
MreI	CGCCGGCG	1 cut(s)	763
MroNI	GCCGGC	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	232
MseI	TTAA	4 cut(s)	60, 324, 344, 684
MslI	CAYNNNNRTG	1 cut(s)	265
MspA1I	CMGCKG	3 cut(s)	46, 140, 173
MspCI	CTTAAG	2 cut(s)	59, 343
MspI	CCGG	5 cut(s)	132, 693, 718, 731, 764
MspR9I	CCNGG	3 cut(s)	440, 569, 718
MvaI	CCWGG	2 cut(s)	440, 569
MvnI	CGCG	2 cut(s)	769, 782
MwoI	GCNNNNNNNGC	4 cut(s)	52, 656, 695, 766
NaeI	GCCGGC	1 cut(s)	765
NciI	CCSGG	1 cut(s)	718
NdeII	GATC	2 cut(s)	11, 458
NgoMIV	GCCGGC	1 cut(s)	763
NlaIII	CATG	5 cut(s)	264, 458, 494, 566, 713
NlaIV	GGNNCC	4 cut(s)	54, 136, 379, 775
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	2 cut(s)	106, 241
NspI	RCATGY	1 cut(s)	713
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	709
PdiI	GCCGGC	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	45, 57, 691, 762, 786
PleI	GAGTC	2 cut(s)	118, 567
PpsI	GAGTC	2 cut(s)	118, 567
PscI	ACATGT	1 cut(s)	709
PshBI	ATTAAT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	438, 567
PspGI	CCWGG	2 cut(s)	438, 567
PspN4I	GGNNCC	4 cut(s)	54, 136, 379, 775
PspPI	GGNCC	2 cut(s)	649, 773
PsuI	RGATCY	1 cut(s)	458
PvuII	CAGCTG	2 cut(s)	46, 173
RsaI	GTAC	3 cut(s)	534, 621, 681
RsaNI	GTAC	3 cut(s)	533, 620, 680
RseI	CAYNNNNRTG	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	335
SaqAI	TTAA	4 cut(s)	60, 324, 344, 684
SatI	GCNGC	5 cut(s)	44, 56, 690, 761, 785
Sau3AI	GATC	2 cut(s)	11, 458
Sau96I	GGNCC	2 cut(s)	649, 773
ScaI	AGTACT	1 cut(s)	621
SchI	GAGTC	2 cut(s)	118, 568
ScrFI	CCNGG	3 cut(s)	440, 569, 718
SduI	GDGCHC	2 cut(s)	335, 542
SetI	ASST	8 cut(s)	48, 87, 175, 258, 335, 520, 592, 691
SfaNI	GCATC	1 cut(s)	711
SfcI	CTRYAG	2 cut(s)	223, 791
SgrAI	CRCCGGYG	1 cut(s)	763
SinI	GGWCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	1 cut(s)	265
SmlI	CTYRAG	3 cut(s)	59, 343, 513
SmoI	CTYRAG	3 cut(s)	59, 343, 513
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	5 cut(s)	291, 321, 364, 386, 505
SsiI	CCGC	6 cut(s)	7, 50, 56, 138, 761, 785
SspMI	CTAG	3 cut(s)	27, 102, 725
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	438, 567, 716
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	403, 537, 792
TaqI	TCGA	1 cut(s)	393
TasI	AATT	5 cut(s)	291, 321, 364, 386, 505
TatI	WGTACW	3 cut(s)	532, 619, 679
TauI	GCSGC	3 cut(s)	58, 763, 787
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	4 cut(s)	60, 324, 344, 684
Tru9I	TTAA	4 cut(s)	60, 324, 344, 684
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	2 cut(s)	106, 241
TseI	GCWGC	2 cut(s)	43, 689
Tsp45I	GTSAC	2 cut(s)	106, 241
TspDTI	ATGAA	3 cut(s)	249, 348, 507
TspRI	CASTG	1 cut(s)	795
Vha464I	CTTAAG	2 cut(s)	59, 343
VpaK11BI	GGWCC	1 cut(s)	773
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	3 cut(s)	291, 364, 386
XceI	RCATGY	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	3 cut(s)	27, 102, 725
ZrmI	AGTACT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.