Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

15088985 .. 15092363

Gene Structure 3379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027777

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGAGCTTCGCGGCTCGGATTCATTTCGCAGAGACCAAGGGATTCGAGGTCGGAGATTTCCCGACAGTGAGTTTGAATTTGGAATTGGTGCGGAAGCTGGAGTCGGGGCTTGAGGTTTCGCTGGGAGGCTCAGTGACGGACATGGAGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGTTGTGGTGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGTGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGTGTCGGGAAAGACTAGGGCGACTATTTTCTCTGGGACTCAGATCGGCACCGCTGAAGGCTTCACCAAGCTCATAATGTTTATGTGCTCTTTTCAATGTTGTAAACAAGATTGGTGGATCTGGTTTGGATCTCAGAAGCAAAGCAAGGGCTCTCATGGACCTTGTTCTGTTTTATGGCTCTCATGGACCTTGTTCTGTTTTAAGGCTCTCATACATTGCTCTATATCATTGACTGAATATGTACTGGATGCAAAGCCTCTTTTGAAGGAGGCCCTTCAAGCCAAATTTGGACTGCCAGTGGACAGGGACATCCCATTAATAGGCTTCATTGGTAGGCTAGAGGAGCAGAAAGGTTCAGATATTCTAGTGGAAGCCATTCCAGAATTGGCAGGAGAGAATTTGCAAATAATAATCCTTGTTCTTACCGAGGGAAACAAAAGGATGTACTTAAAGCTGCCGGTGCATTGTTTTCACATATTTGTGAGGTTTAGGCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

263

Amino Acids

29.48

Weight (kDa)

5.81

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	253, 335
AccII	CGCG	1 cut(s)	14
AciI	CCGC	4 cut(s)	14, 94, 257, 339
AclWI	GGATC	2 cut(s)	413, 424
AcsI	RAATTY	3 cut(s)	79, 572, 685
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	531, 734
AfiI	CCNNNNNNNGG	1 cut(s)	608
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	79, 171, 383, 553, 566
AhlI	ACTAGT	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	5 cut(s)	9, 100, 247, 358, 742
AluI	AGCT	5 cut(s)	9, 100, 247, 358, 742
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	413, 424
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	244, 742
ApoI	RAATTY	3 cut(s)	79, 572, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AseI	ATTAAT	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	663
AspS9I	GGNCC	3 cut(s)	446, 474, 559
AsuHPI	GGTGA	3 cut(s)	166, 250, 343
AvaII	GGWCC	2 cut(s)	446, 474
BanI	GGYRCC	2 cut(s)	253, 335
BanII	GRGCYC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	256, 729
BcoDI	GTCTC	1 cut(s)	29
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	4 cut(s)	228, 303, 626, 653
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	4 cut(s)	15, 245, 257, 743
BlsI	GCNGC	4 cut(s)	16, 246, 258, 744
Bme18I	GGWCC	2 cut(s)	446, 474
BmgT120I	GGNCC	3 cut(s)	446, 474, 559
BmiI	GGNNCC	2 cut(s)	255, 337
BmsI	GCATC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	39, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	2 cut(s)	537, 584
Bse3DI	GCAATG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	39, 714
BseGI	GGATG	3 cut(s)	541, 597, 735
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	147, 341, 434
BseNI	ACTGG	2 cut(s)	537, 584
BseRI	GAGGAG	2 cut(s)	281, 644
BseXI	GCAGC	2 cut(s)	256, 729
BseYI	CCCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	560
BshNI	GGYRCC	2 cut(s)	253, 335
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	2 cut(s)	337, 608
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	337, 608
BsnI	GGCC	1 cut(s)	560
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	377, 440
Bsp143I	GATC	4 cut(s)	212, 330, 405, 416
BspACI	CCGC	4 cut(s)	14, 94, 257, 339
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	3 cut(s)	146, 340, 433
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	255, 337
BspPI	GGATC	2 cut(s)	413, 424
BspT107I	GGYRCC	2 cut(s)	253, 335
BspTI	CTTAAG	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	2 cut(s)	537, 584
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	39, 714
BssMI	GATC	4 cut(s)	212, 330, 405, 416
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	260
BstDEI	CTNAG	3 cut(s)	133, 327, 420
BstF5I	GGATG	3 cut(s)	541, 597, 735
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	4 cut(s)	215, 333, 408, 419
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	4 cut(s)	212, 330, 405, 416
BstMWI	GCNNNNNNNGC	4 cut(s)	253, 566, 631, 748
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	256, 729
BstX2I	RGATCY	2 cut(s)	405, 416
BstYI	RGATCY	2 cut(s)	405, 416
BsuRI	GGCC	1 cut(s)	560
BtsCI	GGATG	3 cut(s)	541, 597, 735
BtsIMutI	CAGTG	3 cut(s)	75, 141, 591
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	3 cut(s)	446, 474, 559
Csp6I	GTAC	2 cut(s)	530, 733
CspCI	CAANNNNNGTGG	2 cut(s)	383, 418
CviAII	CATG	3 cut(s)	145, 443, 471
CviQI	GTAC	2 cut(s)	530, 733
DdeI	CTNAG	3 cut(s)	133, 327, 420
DpnI	GATC	4 cut(s)	214, 332, 407, 418
DpnII	GATC	4 cut(s)	212, 330, 405, 416
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	446, 474
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	148, 446, 474
FaqI	GGGAC	2 cut(s)	337, 608
FatI	CATG	3 cut(s)	144, 442, 470
Fnu4HI	GCNGC	4 cut(s)	15, 245, 257, 743
FokI	GGATG	3 cut(s)	548, 584, 742
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	4 cut(s)	15, 245, 257, 743
FspBI	CTAG	4 cut(s)	228, 303, 626, 653
GluI	GCNGC	4 cut(s)	15, 245, 257, 743
GsaI	CCCAGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	746
Hin1II	CATG	3 cut(s)	148, 446, 474
HinfI	GANTC	4 cut(s)	22, 45, 104, 325
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	166, 250, 343
Hpy166II	GTNNAC	2 cut(s)	392, 589
Hpy188I	TCNGA	6 cut(s)	21, 56, 220, 330, 423, 646
Hpy188III	TCNNGA	3 cut(s)	64, 294, 668
Hpy8I	GTNNAC	2 cut(s)	392, 589
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	338, 547, 572
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	539, 691, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	253, 566, 631, 748
HpyF3I	CTNAG	3 cut(s)	133, 327, 420
Hsp92II	CATG	3 cut(s)	148, 446, 474
Kzo9I	GATC	4 cut(s)	212, 330, 405, 416
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	2 cut(s)	256, 729
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	4 cut(s)	228, 303, 626, 653
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	214, 332, 407, 418
MboI	GATC	4 cut(s)	212, 330, 405, 416
MboII	GAAGA	1 cut(s)	284
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	2 cut(s)	405, 416
MhlI	GDGCHC	2 cut(s)	377, 440
MluCI	AATT	7 cut(s)	79, 86, 171, 183, 572, 671, 685
MlyI	GAGTC	2 cut(s)	113, 319
MmeI	TCCRAC	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	5 cut(s)	261, 489, 605, 737, 787
MslI	CAYNNNNRTG	2 cut(s)	149, 767
MspA1I	CMGCKG	2 cut(s)	247, 341
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	253, 566, 631, 748
NdeII	GATC	4 cut(s)	212, 330, 405, 416
NlaIII	CATG	3 cut(s)	148, 446, 474
NlaIV	GGNNCC	2 cut(s)	255, 337
NmuCI	GTSAC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	22, 45
PkrI	GCNGC	4 cut(s)	16, 246, 258, 744
PleI	GAGTC	2 cut(s)	112, 319
PpsI	GAGTC	2 cut(s)	112, 319
PshBI	ATTAAT	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	255, 337
PspPI	GGNCC	3 cut(s)	446, 474, 559
PsuI	RGATCY	2 cut(s)	405, 416
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	531, 734
RsaNI	GTAC	2 cut(s)	530, 733
RseI	CAYNNNNRTG	2 cut(s)	149, 767
SaqAI	TTAA	5 cut(s)	261, 489, 605, 737, 787
SatI	GCNGC	4 cut(s)	15, 245, 257, 743
Sau3AI	GATC	4 cut(s)	212, 330, 405, 416
Sau96I	GGNCC	3 cut(s)	446, 474, 559
SchI	GAGTC	2 cut(s)	113, 319
SduI	GDGCHC	2 cut(s)	377, 440
SfaNI	GCATC	1 cut(s)	526
SinI	GGWCC	2 cut(s)	446, 474
SmiMI	CAYNNNNRTG	2 cut(s)	149, 767
SmlI	CTYRAG	2 cut(s)	113, 260
SmoI	CTYRAG	2 cut(s)	113, 260
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	7 cut(s)	79, 86, 171, 183, 572, 671, 685
SsiI	CCGC	4 cut(s)	14, 94, 257, 339
SspMI	CTAG	4 cut(s)	228, 303, 626, 653
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	48
TasI	AATT	7 cut(s)	79, 86, 171, 183, 572, 671, 685
TatI	WGTACW	2 cut(s)	529, 732
TauI	GCSGC	2 cut(s)	17, 259
TfiI	GAWTC	2 cut(s)	22, 45
Tru1I	TTAA	5 cut(s)	261, 489, 605, 737, 787
Tru9I	TTAA	5 cut(s)	261, 489, 605, 737, 787
TscAI	CASTG	3 cut(s)	75, 141, 591
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	244, 742
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	14, 604
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	3 cut(s)	75, 141, 591
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	446, 474
VspI	ATTAAT	1 cut(s)	605
XapI	RAATTY	3 cut(s)	79, 572, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	4 cut(s)	228, 303, 626, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.