Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

14564948 .. 14567701

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGTTGTGGCGGAGATCGTCCGATAAGACTAGTCGGGTGGTGAAGCGGTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCGTCGGGCAAGACTAGGTGTCTGCGAACAATGTAACAATGTTAAATATGAAAGGGAGGGATATTTCATCACCGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAAAGATGTAACTCCTCCCAATCTCCAATTAATGAGAGCTCAAAGCCCTTAAGAACCATCACTTCATCAAGTTTGCGAGATGGTTCCACTAAATTCTTCGATTTTACCGTTATTGGTAGTGGAGTTGCTGGCCTCCGCTATGCCCCGGAAGTGGCAAAACATGGATCTGTTGCTGTCATTACCAAGGCCGAGCCTCATGAAAGTAATACAAATTATGCTCAAGGTGGTGTTGGTGCTGTACCGTGCCCTTCGGATTCGTGGAGAGTCATGTCCAGGACACCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

197

Amino Acids

21.99

Weight (kDa)

9.45

Isoelectric Point (pI)

71.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	137 - 185	2.6e-09	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	6 cut(s)	5, 64, 100, 106, 112, 442
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	457
AflII	CTTAAG	2 cut(s)	115, 355
AgsI	TTSAA	1 cut(s)	27
AhdI	GACNNNNNGTC	1 cut(s)	161
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	295, 578
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
Alw21I	GWGCWC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	478
AoxI	GGCC	2 cut(s)	436, 492
ApoI	RAATTY	1 cut(s)	398
AseI	ATTAAT	1 cut(s)	336
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	4 cut(s)	22, 106, 205, 284
BaeGI	GKGCMC	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	347
BccI	CCATC	5 cut(s)	236, 263, 281, 371, 380
BciT130I	CCWGG	2 cut(s)	297, 580
BcnI	CCSGG	1 cut(s)	452
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 158
BfrI	CTTAAG	2 cut(s)	115, 355
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	3 cut(s)	297, 452, 580
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	110, 391
BmrFI	CCNGG	3 cut(s)	297, 452, 580
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	450, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
BseBI	CCWGG	2 cut(s)	297, 580
BseDI	CCNNGG	2 cut(s)	450, 489
BseGI	GGATG	2 cut(s)	240, 274
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseRI	GAGGAG	2 cut(s)	136, 310
BseSI	GKGCMC	1 cut(s)	554
BshFI	GGCC	2 cut(s)	438, 494
BshNI	GGYRCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	457
BsnI	GGCC	2 cut(s)	438, 494
Bsp1286I	GDGCHC	2 cut(s)	347, 554
Bsp143I	GATC	2 cut(s)	68, 470
BspACI	CCGC	6 cut(s)	5, 64, 100, 106, 112, 442
BspANI	GGCC	2 cut(s)	438, 494
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	110, 391
BspPI	GGATC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	108
BspTI	CTTAAG	2 cut(s)	115, 355
BssECI	CCNNGG	2 cut(s)	450, 489
BssMI	GATC	2 cut(s)	68, 470
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	297, 580
Bst4CI	ACNGT	3 cut(s)	217, 415, 549
BstAFI	CTTAAG	2 cut(s)	115, 355
BstC8I	GCNNGC	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	240, 274
BstKTI	GATC	2 cut(s)	71, 473
BstMBI	GATC	2 cut(s)	68, 470
BstNI	CCWGG	2 cut(s)	297, 580
BstSCI	CCNGG	3 cut(s)	295, 450, 578
BstSLI	GKGCMC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	438, 494
BtsCI	GGATG	2 cut(s)	240, 274
Cac8I	GCNNGC	1 cut(s)	436
CciI	TCATGA	1 cut(s)	502
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	3 cut(s)	467, 503, 574
CviJI	RGCY	5 cut(s)	345, 352, 438, 494, 499
CviKI_1	RGCY	5 cut(s)	345, 352, 438, 494, 499
CviQI	GTAC	1 cut(s)	545
DpnI	GATC	2 cut(s)	70, 472
DpnII	GATC	2 cut(s)	68, 470
DraI	TTTAAA	1 cut(s)	306
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	295, 578
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	470, 506, 577
FaiI	YATR	8 cut(s)	192, 264, 281, 447, 468, 504, 522, 575
FatI	CATG	3 cut(s)	466, 502, 573
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	2 cut(s)	247, 281
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	84, 158
GluI	GCNGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	438, 494
HapII	CCGG	1 cut(s)	452
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	470, 506, 577
HinfI	GANTC	2 cut(s)	560, 570
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	4 cut(s)	22, 106, 205, 284
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	76, 559
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	2 cut(s)	22, 150
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	3 cut(s)	217, 415, 549
HpyCH4V	TGCA	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	470, 506, 577
Kzo9I	GATC	2 cut(s)	68, 470
LpnPI	CCDG	5 cut(s)	282, 309, 420, 465, 565
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	84, 158
MaeIII	GTNAC	2 cut(s)	176, 314
MalI	GATC	2 cut(s)	70, 472
MboI	GATC	2 cut(s)	68, 470
MboII	GAAGA	2 cut(s)	139, 394
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	347, 554
MluCI	AATT	6 cut(s)	27, 39, 282, 333, 398, 517
MlyI	GAGTC	1 cut(s)	579
MnlI	CCTC	9 cut(s)	114, 117, 132, 193, 244, 259, 331, 449, 510
MseI	TTAA	5 cut(s)	116, 186, 305, 336, 356
MspCI	CTTAAG	2 cut(s)	115, 355
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	3 cut(s)	297, 452, 580
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	297, 580
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	2 cut(s)	68, 470
NlaIII	CATG	3 cut(s)	470, 506, 577
NlaIV	GGNNCC	2 cut(s)	110, 391
NmeAIII	GCCGAG	1 cut(s)	520
PagI	TCATGA	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	560
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	295, 578
PspGI	CCWGG	2 cut(s)	295, 578
PspN4I	GGNNCC	2 cut(s)	110, 391
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
SacI	GAGCTC	1 cut(s)	347
SaqAI	TTAA	5 cut(s)	116, 186, 305, 336, 356
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	68, 470
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	3 cut(s)	297, 452, 580
SduI	GDGCHC	2 cut(s)	347, 554
SetI	ASST	6 cut(s)	143, 163, 255, 298, 347, 532
SfaNI	GCATC	1 cut(s)	225
SmlI	CTYRAG	3 cut(s)	115, 355, 525
SmoI	CTYRAG	3 cut(s)	115, 355, 525
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	6 cut(s)	27, 39, 282, 333, 398, 517
SsiI	CCGC	6 cut(s)	5, 64, 100, 106, 112, 442
SspMI	CTAG	2 cut(s)	84, 158
SstI	GAGCTC	1 cut(s)	347
StyD4I	CCNGG	3 cut(s)	295, 450, 578
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	3 cut(s)	217, 415, 549
TaqI	TCGA	1 cut(s)	405
TasI	AATT	6 cut(s)	27, 39, 282, 333, 398, 517
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	5 cut(s)	116, 186, 305, 336, 356
Tru9I	TTAA	5 cut(s)	116, 186, 305, 336, 356
TspDTI	ATGAA	4 cut(s)	199, 207, 360, 519
Vha464I	CTTAAG	2 cut(s)	115, 355
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	1 cut(s)	398
XspI	CTAG	2 cut(s)	84, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.