Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013680.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

37339 .. 41040

Gene Structure 3702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013680.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ctggagtcggcgcttggagtttcgctgggaggctcggtgacggacatggcggtggtgatagcgacgacttcaattgagttgataattgggtttttggtggtgctatggcggagatcgtctgataagactagtcaggtggtgaagcagctggcggtgctgcttaaggaggagaaagatgagtttgaggttgcgtcgagcaagactcgggtgactattttctctaggactcagaccggcaccgctgaaggtttcgccaaggagcagcaacgagaagaagaggacggtcactgtagcagttttgagttaacgccgatattttccgattccgacagtctcctgccaccaaactggcgtcgaagggttcttggaatttctggaaatttttcaccggccaaattggagctcttccaggtaaaattgaaacttgacgtagttgagaaagaggttggcattgatcttcctcctttgtggcgaggtgatgggatcaccgaagccctccgcctttgtagcgctggttactgtctctgtgaccgtaattctcaagcccagtatcttatcgctacacatagtggcttaaggttgagttttgtgttttgcgaattggggaatgttgtgaaatggggagcaaggtggctccaggagtataaggttggtgggccccgcaggactactttggatttcggggtgaaattcagggcgggtcctgtcatgaagactctgccaggacctgttaggagaggcaacaatatcttggtgggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

253

Amino Acids

27.93

Weight (kDa)

8.6

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	7 cut(s)	50, 109, 152, 240, 499, 661, 698
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	3 cut(s)	369, 379, 689
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	352
AdeI	CACNNNGTG	1 cut(s)	569
AfeI	AGCGCT	1 cut(s)	511
AflII	CTTAAG	2 cut(s)	161, 574
AgsI	TTSAA	2 cut(s)	72, 421
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	3 cut(s)	408, 636, 721
AluBI	AGCT	2 cut(s)	148, 403
AluI	AGCT	2 cut(s)	148, 403
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	2 cut(s)	338, 527
AlwI	GGATC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	728
Ama87I	CYCGRG	1 cut(s)	204
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	2 cut(s)	390, 656
ApaI	GGGCCC	1 cut(s)	660
ApeKI	GCWGC	3 cut(s)	145, 157, 262
ApoI	RAATTY	3 cut(s)	369, 379, 689
Asp700I	GAANNNNTTC	1 cut(s)	382
AspLEI	GCGC	2 cut(s)	13, 512
AspS9I	GGNCC	4 cut(s)	656, 657, 701, 725
AsuHPI	GGTGA	8 cut(s)	49, 67, 151, 220, 378, 478, 488, 697
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	701, 725
BaeGI	GKGCMC	1 cut(s)	660
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	405, 660
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	144, 157, 274
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	3 cut(s)	410, 638, 723
BcoDI	GTCTC	2 cut(s)	338, 527
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	2 cut(s)	129, 222
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	2 cut(s)	14, 513
BfrI	CTTAAG	2 cut(s)	161, 574
BisI	GCNGC	3 cut(s)	146, 158, 263
BlsI	GCNGC	3 cut(s)	147, 159, 264
Bme1390I	CCNGG	3 cut(s)	410, 638, 723
Bme18I	GGWCC	2 cut(s)	701, 725
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	4 cut(s)	656, 657, 701, 725
BmiI	GGNNCC	5 cut(s)	238, 635, 658, 659, 702
BmrFI	CCNGG	3 cut(s)	410, 638, 723
BmrI	ACTGGG	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	2 cut(s)	23, 620
BpuEI	CTTGAG	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse118I	RCCGGY	2 cut(s)	233, 388
Bse1I	ACTGG	2 cut(s)	353, 547
BseBI	CCWGG	3 cut(s)	410, 638, 723
BseDI	CCNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	353, 547
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	660
BseXI	GCAGC	3 cut(s)	144, 157, 274
BseYI	CCCAGC	1 cut(s)	25
BshFI	GGCC	2 cut(s)	392, 658
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	234, 389
BsmAI	GTCTC	2 cut(s)	338, 527
BsnI	GGCC	2 cut(s)	392, 658
BsoBI	CYCGRG	1 cut(s)	204
Bsp120I	GGGCCC	1 cut(s)	656
Bsp1286I	GDGCHC	2 cut(s)	405, 660
Bsp143I	GATC	3 cut(s)	113, 454, 483
BspACI	CCGC	7 cut(s)	50, 109, 152, 240, 499, 661, 698
BspANI	GGCC	2 cut(s)	392, 658
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	5 cut(s)	238, 635, 658, 659, 702
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	236
BspTI	CTTAAG	2 cut(s)	161, 574
BsrFI	RCCGGY	2 cut(s)	233, 388
BsrI	ACTGG	2 cut(s)	353, 547
BssAI	RCCGGY	2 cut(s)	233, 388
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	3 cut(s)	113, 454, 483
BssNI	GRCGYC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	3 cut(s)	410, 638, 723
Bst4CI	ACNGT	5 cut(s)	284, 290, 332, 521, 533
Bst6I	CTCTTC	2 cut(s)	270, 410
BstACI	GRCGYC	1 cut(s)	352
BstAFI	CTTAAG	2 cut(s)	161, 574
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	228
BstH2I	RGCGCY	2 cut(s)	14, 513
BstHHI	GCGC	2 cut(s)	13, 512
BstKTI	GATC	3 cut(s)	116, 457, 486
BstMAI	GTCTC	2 cut(s)	338, 527
BstMBI	GATC	3 cut(s)	113, 454, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 507
BstNI	CCWGG	3 cut(s)	410, 638, 723
BstSCI	CCNGG	3 cut(s)	408, 636, 721
BstSFI	CTRYAG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	144, 157, 274
BstV2I	GAAGAC	1 cut(s)	719
BstXI	CCANNNNNNTGG	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	392, 658
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	728
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	2 cut(s)	13, 512
Cfr10I	RCCGGY	2 cut(s)	233, 388
Cfr13I	GGNCC	4 cut(s)	656, 657, 701, 725
CseI	GACGC	2 cut(s)	180, 341
CviAII	CATG	2 cut(s)	46, 709
CviJI	RGCY	9 cut(s)	33, 148, 392, 403, 494, 545, 573, 634, 658
CviKI_1	RGCY	9 cut(s)	33, 148, 392, 403, 494, 545, 573, 634, 658
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	115, 456, 485
DpnII	GATC	3 cut(s)	113, 454, 483
DraIII	CACNNNGTG	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	2 cut(s)	270, 410
EarI	CTCTTC	2 cut(s)	270, 410
EciI	GGCGGA	2 cut(s)	124, 488
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	405, 660
Eco47I	GGWCC	2 cut(s)	701, 725
Eco47III	AGCGCT	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	3 cut(s)	657, 701, 725
EcoRII	CCWGG	3 cut(s)	408, 636, 721
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	2 cut(s)	405, 660
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	49, 712
FaiI	YATR	5 cut(s)	47, 106, 567, 645, 710
FatI	CATG	2 cut(s)	45, 708
FauI	CCCGC	2 cut(s)	668, 691
Fnu4HI	GCNGC	3 cut(s)	146, 158, 263
FriOI	GRGCYC	2 cut(s)	405, 660
Fsp4HI	GCNGC	3 cut(s)	146, 158, 263
FspBI	CTAG	2 cut(s)	129, 222
GlaI	GCGC	2 cut(s)	12, 511
GluI	GCNGC	3 cut(s)	146, 158, 263
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	2 cut(s)	23, 620
HaeII	RGCGCY	2 cut(s)	14, 513
HaeIII	GGCC	2 cut(s)	392, 658
HapII	CCGG	2 cut(s)	234, 389
HgaI	GACGC	2 cut(s)	180, 341
HhaI	GCGC	2 cut(s)	13, 512
Hin1I	GRCGYC	1 cut(s)	352
Hin1II	CATG	2 cut(s)	49, 712
Hin6I	GCGC	2 cut(s)	11, 510
HinP1I	GCGC	2 cut(s)	11, 510
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	5 cut(s)	5, 202, 226, 323, 715
HpaI	GTTAAC	1 cut(s)	306
HpaII	CCGG	2 cut(s)	234, 389
HphI	GGTGA	8 cut(s)	49, 67, 151, 220, 378, 478, 488, 697
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	4 cut(s)	121, 231, 322, 328
Hpy188III	TCNNGA	2 cut(s)	375, 709
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	3 cut(s)	67, 196, 357
HpyAV	CCTTC	2 cut(s)	239, 351
HpyCH4III	ACNGT	5 cut(s)	284, 290, 332, 521, 533
HpyCH4IV	ACGT	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 507
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	49, 712
HspAI	GCGC	2 cut(s)	11, 510
KspAI	GTTAAC	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	113, 454, 483
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	4 cut(s)	259, 400, 623, 639
Lsp1109I	GCAGC	3 cut(s)	144, 157, 274
MaeI	CTAG	2 cut(s)	129, 222
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	5 cut(s)	37, 208, 284, 515, 527
MalI	GATC	3 cut(s)	115, 456, 485
MboI	GATC	3 cut(s)	113, 454, 483
MboII	GAAGA	5 cut(s)	284, 287, 397, 449, 724
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	405, 660
MluCI	AATT	9 cut(s)	72, 84, 369, 379, 395, 416, 535, 599, 689
MlyI	GAGTC	4 cut(s)	14, 196, 220, 709
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	9 cut(s)	23, 160, 178, 271, 436, 467, 471, 506, 731
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	4 cut(s)	162, 305, 575, 760
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	148, 242
MspCI	CTTAAG	2 cut(s)	161, 574
MspI	CCGG	2 cut(s)	234, 389
MspR9I	CCNGG	3 cut(s)	410, 638, 723
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	3 cut(s)	410, 638, 723
MwoI	GCNNNNNNNGC	2 cut(s)	154, 507
NdeII	GATC	3 cut(s)	113, 454, 483
NlaIII	CATG	2 cut(s)	49, 712
NlaIV	GGNNCC	5 cut(s)	238, 635, 658, 659, 702
NmuCI	GTSAC	4 cut(s)	37, 208, 284, 527
PagI	TCATGA	1 cut(s)	708
PciSI	GCTCTTC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	636
PkrI	GCNGC	3 cut(s)	147, 159, 264
PleI	GAGTC	4 cut(s)	13, 196, 220, 709
PpsI	GAGTC	4 cut(s)	13, 196, 220, 709
PpuMI	RGGWCCY	2 cut(s)	701, 725
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	2 cut(s)	701, 725
Psp6I	CCWGG	3 cut(s)	408, 636, 721
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	3 cut(s)	408, 636, 721
PspN4I	GGNNCC	5 cut(s)	238, 635, 658, 659, 702
PspOMI	GGGCCC	1 cut(s)	656
PspPI	GGNCC	4 cut(s)	656, 657, 701, 725
PspPPI	RGGWCCY	2 cut(s)	701, 725
PstNI	CAGNNNCTG	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	162, 305, 575, 760
SatI	GCNGC	3 cut(s)	146, 158, 263
Sau3AI	GATC	3 cut(s)	113, 454, 483
Sau96I	GGNCC	4 cut(s)	656, 657, 701, 725
SchI	GAGTC	4 cut(s)	14, 196, 220, 709
ScrFI	CCNGG	3 cut(s)	410, 638, 723
SduI	GDGCHC	2 cut(s)	405, 660
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	2 cut(s)	701, 725
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	3 cut(s)	161, 540, 574
SmoI	CTYRAG	3 cut(s)	161, 540, 574
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	9 cut(s)	72, 84, 369, 379, 395, 416, 535, 599, 689
SsiI	CCGC	7 cut(s)	50, 109, 152, 240, 499, 661, 698
SspMI	CTAG	2 cut(s)	129, 222
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	3 cut(s)	408, 636, 721
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	5 cut(s)	284, 290, 332, 521, 533
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	194, 355
TasI	AATT	9 cut(s)	72, 84, 369, 379, 395, 416, 535, 599, 689
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	4 cut(s)	162, 305, 575, 760
Tru9I	TTAA	4 cut(s)	162, 305, 575, 760
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	4 cut(s)	37, 208, 284, 527
TseI	GCWGC	3 cut(s)	145, 157, 262
Tsp45I	GTSAC	4 cut(s)	37, 208, 284, 527
TspDTI	ATGAA	1 cut(s)	725
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	293
Vha464I	CTTAAG	2 cut(s)	161, 574
VpaK11BI	GGWCC	2 cut(s)	701, 725
XapI	RAATTY	3 cut(s)	369, 379, 689
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	2 cut(s)	129, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.