Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

11596409 .. 11597651

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACGGAACAGGTCTGCGAACAATGTAACAATGTTAAATATGAAAGGGAGGGATATTTCATCACCGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAAGTCGGTGCTTTGACCTTACCACCTTGGTCGTGTGGGGTTTCAAAGTTCTTGCAAATTCGGAGATGTAACTCCTCCCAATCTCCAATTAATGAGAGCTCAAAGCCCTTAAGAACCATCACTTCATCAAGTTTGCGAGATGGTTCCACTAAATTCTTCGATTTTACTGTTATTAGTAGTGGAGTTGCTGGCCTCCGCTATGCCTTGGAAGTGGAAAAACATGGATCATTCTTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTCAAGGTGGTGTTAGTGCTGTCTTGTGCCCTTCGGATTCGTGGAGAGTCATGTCCGGGACACCATTGTAGCAAGAGCTTATCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

173

Amino Acids

19.15

Weight (kDa)

6.3

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	213, 308
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	201
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	255, 510
AluI	AGCT	2 cut(s)	255, 510
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	1 cut(s)	346
ApoI	RAATTY	2 cut(s)	213, 308
AseI	ATTAAT	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	2 cut(s)	55, 134
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BccI	CCATC	5 cut(s)	86, 113, 131, 281, 290
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	489
BfrI	CTTAAG	1 cut(s)	265
BlpI	GCTNAGC	1 cut(s)	404
Bme1390I	CCNGG	2 cut(s)	147, 489
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	147, 489
BmsI	GCATC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	182, 360, 398
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	182, 360, 398
BseGI	GGATG	2 cut(s)	90, 124
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	463
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	2 cut(s)	257, 463
Bsp143I	GATC	1 cut(s)	380
Bsp1720I	GCTNAGC	1 cut(s)	404
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	182, 360, 398
BssMI	GATC	1 cut(s)	380
BssT1I	CCWWGG	3 cut(s)	182, 360, 398
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	67, 325
BstAFI	CTTAAG	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	90, 124
BstKTI	GATC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	145, 487
BstSLI	GKGCMC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	90, 124
Cac8I	GCNNGC	1 cut(s)	346
CciI	TCATGA	1 cut(s)	411
CviAII	CATG	3 cut(s)	377, 412, 483
CviJI	RGCY	6 cut(s)	255, 262, 348, 403, 408, 510
CviKI_1	RGCY	6 cut(s)	255, 262, 348, 403, 408, 510
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
DraI	TTTAAA	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	3 cut(s)	182, 360, 398
Eco24I	GRGCYC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	3 cut(s)	182, 360, 398
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	3 cut(s)	182, 360, 398
FaeI	CATG	3 cut(s)	380, 415, 486
FaiI	YATR	9 cut(s)	42, 114, 131, 357, 378, 413, 431, 484, 518
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	3 cut(s)	376, 411, 482
FokI	GGATG	2 cut(s)	97, 131
FriOI	GRGCYC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	3 cut(s)	380, 415, 486
HinfI	GANTC	2 cut(s)	469, 479
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	2 cut(s)	55, 134
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	2 cut(s)	219, 468
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	67, 325
HpyCH4V	TGCA	2 cut(s)	88, 211
HpyF3I	CTNAG	1 cut(s)	404
Hsp92II	CATG	3 cut(s)	380, 415, 486
Kzo9I	GATC	1 cut(s)	380
LpnPI	CCDG	4 cut(s)	132, 159, 330, 501
LweI	GCATC	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	26, 224
MalI	GATC	1 cut(s)	382
MboI	GATC	1 cut(s)	380
MboII	GAAGA	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	257, 463
MluCI	AATT	5 cut(s)	132, 213, 243, 308, 426
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	6 cut(s)	43, 94, 109, 241, 359, 419
MseI	TTAA	4 cut(s)	36, 155, 246, 266
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	2 cut(s)	147, 489
MvaI	CCWGG	1 cut(s)	147
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	380, 415, 486
NlaIV	GGNNCC	1 cut(s)	301
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	469
PfoI	TCCNGGA	1 cut(s)	487
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	301
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	4 cut(s)	36, 155, 246, 266
Sau3AI	GATC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	147, 489
SduI	GDGCHC	2 cut(s)	257, 463
SetI	ASST	8 cut(s)	15, 105, 148, 176, 184, 257, 441, 512
SfaNI	GCATC	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	265, 434
SmoI	CTYRAG	2 cut(s)	265, 434
Sse9I	AATT	5 cut(s)	132, 213, 243, 308, 426
SsiI	CCGC	1 cut(s)	352
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	145, 487
StyI	CCWWGG	3 cut(s)	182, 360, 398
TaaI	ACNGT	2 cut(s)	67, 325
TaqI	TCGA	1 cut(s)	315
TasI	AATT	5 cut(s)	132, 213, 243, 308, 426
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	4 cut(s)	36, 155, 246, 266
Tru9I	TTAA	4 cut(s)	36, 155, 246, 266
TspDTI	ATGAA	4 cut(s)	49, 57, 270, 428
TspGWI	ACGGA	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	2 cut(s)	213, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.