Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

70917686 .. 70919175

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTAATAATTGGGTTTTTGGTGGTGCTGTGGCGGAGATCGTCTGATAAGACTAGTCAGGTGGTGAAGCAGCTGGTGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCATCGGGCAAGACTAGGGTGACTATTTTCTCTGGGACTCAGACCGGCACCGCTGAAGGTTTGGAGGGAGAAGAACGTTATAAAGCCAACACCAAGAAAGAGACGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

84

Amino Acids

9.29

Weight (kDa)

5.15

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccB1I	GGYRCC	2 cut(s)	109, 191
AciI	CCGC	4 cut(s)	5, 64, 113, 195
AclI	AACGTT	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	27
AhlI	ACTAGT	1 cut(s)	83
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	22, 106, 175
BanI	GGYRCC	2 cut(s)	109, 191
BbvI	GCAGC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	239
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 159
BfrI	CTTAAG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	101, 113
BlsI	GCNGC	2 cut(s)	102, 114
BmiI	GGNNCC	2 cut(s)	111, 193
BmsI	GCATC	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	112
BshNI	GGYRCC	2 cut(s)	109, 191
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	4 cut(s)	5, 64, 113, 195
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	111, 193
BspT107I	GGYRCC	2 cut(s)	109, 191
BspTI	CTTAAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	188
CviJI	RGCY	2 cut(s)	103, 230
CviKI_1	RGCY	2 cut(s)	103, 230
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	239
FaiI	YATR	1 cut(s)	225
FaqI	GGGAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	101, 113
Fsp4HI	GCNGC	2 cut(s)	101, 113
FspBI	CTAG	2 cut(s)	84, 159
GluI	GCNGC	2 cut(s)	101, 113
HapII	CCGG	1 cut(s)	189
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	22, 106, 175
Hpy188I	TCNGA	2 cut(s)	76, 186
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	220, 248
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	220, 248
Kzo9I	GATC	1 cut(s)	68
LpnPI	CCDG	4 cut(s)	74, 89, 162, 202
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	84, 159
MaeII	ACGT	2 cut(s)	220, 248
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	2 cut(s)	140, 227
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	2 cut(s)	27, 39
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	115, 118, 133, 202
MseI	TTAA	2 cut(s)	35, 117
MspA1I	CMGCKG	2 cut(s)	103, 197
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	111, 193
NmuCI	GTSAC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	102, 114
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PsiI	TTATAA	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	111, 193
PvuII	CAGCTG	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	35, 117
SatI	GCNGC	2 cut(s)	101, 113
Sau3AI	GATC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	175
SetI	ASST	6 cut(s)	93, 105, 144, 205, 223, 251
SfaNI	GCATC	1 cut(s)	155
SgeI	CNNG	9 cut(s)	96, 101, 116, 162, 166, 171, 189, 201, 250
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	2 cut(s)	27, 39
SsiI	CCGC	4 cut(s)	5, 64, 113, 195
SspMI	CTAG	2 cut(s)	84, 159
TaiI	ACGT	2 cut(s)	223, 251
TasI	AATT	2 cut(s)	27, 39
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	35, 117
Tru9I	TTAA	2 cut(s)	35, 117
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	116
XspI	CTAG	2 cut(s)	84, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.