Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

42800445 .. 42805988

Gene Structure 5544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG226900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATCTCAGAAGCAAAGCAAGGACTCTGCCAGGACCTGTTAGGAGAGGCAACAATATCTTGGTACTGGATGCAAAGCCTCTTTTGAAAGAGGCCCTTCAAGCCGAAGTTGGACTGCCAGTGGACAGGGACATCCCATTAATAGGCTTCATTGGTAGGCTAGAGGAGCAGAAAGGTTCAGATATTCTAGTGGAAGCCATTCCAGAATTGGCAGGAGAGAATTTGCAAATAATAATCCTTGTTCTTACCGAGGGTAAACAAAATGATGTACTTAAAGCTGCCAGTGCATTGTTTTCACATATTTGTGAGGTTTGGGCAAGGTTAATGTGCATCACATTTATGGACAAGTATCGTGGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000271 GO:0003674 GO:0003824 GO:0004373 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009569 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017076 GO:0019252 GO:0019863 GO:0019865 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0036094 GO:0043036 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043531 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046527 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

120

Amino Acids

13.22

Weight (kDa)

5.83

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	2 cut(s)	66, 270
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	88, 101
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	220
AseI	ATTAAT	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	35, 94
AvaII	GGWCC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	33
BfaI	CTAG	2 cut(s)	161, 188
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 94
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	61, 339
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	72, 119, 282
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	2 cut(s)	76, 132
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	3 cut(s)	72, 119, 282
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	21
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	72, 119, 282
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	76, 132
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 166, 284
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	76, 132
BtsIMutI	CAGTG	2 cut(s)	126, 289
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	35, 94
Csp6I	GTAC	2 cut(s)	65, 269
CspCI	CAANNNNNGTGG	1 cut(s)	334
CviJI	RGCY	7 cut(s)	79, 95, 104, 147, 160, 197, 278
CviKI_1	RGCY	7 cut(s)	79, 95, 104, 147, 160, 197, 278
CviQI	GTAC	2 cut(s)	65, 269
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco47I	GGWCC	1 cut(s)	35
EcoO109I	RGGNCCY	2 cut(s)	35, 94
EcoRII	CCWGG	1 cut(s)	31
FaiI	YATR	2 cut(s)	300, 341
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	2 cut(s)	83, 119
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	161, 188
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	124, 257
Hpy188I	TCNGA	2 cut(s)	11, 181
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	124, 257
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	74, 226, 287, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 166, 284
HpyF3I	CTNAG	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	18, 45, 51, 53, 112, 132, 198, 216, 295
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	61, 339
MaeI	CTAG	2 cut(s)	161, 188
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	2 cut(s)	206, 220
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	41, 85, 90, 157, 244, 301
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	4 cut(s)	140, 273, 323, 361
MslI	CAYNNNNRTG	2 cut(s)	303, 338
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	101, 166, 284
NdeII	GATC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	35, 94
PspPPI	RGGWCCY	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	66, 270
RsaNI	GTAC	2 cut(s)	65, 269
RseI	CAYNNNNRTG	2 cut(s)	303, 338
SaqAI	TTAA	4 cut(s)	140, 273, 323, 361
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	35, 94
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	5 cut(s)	40, 178, 280, 312, 323
SfaNI	GCATC	2 cut(s)	61, 339
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	303, 338
Sse9I	AATT	2 cut(s)	206, 220
SspMI	CTAG	2 cut(s)	161, 188
StyD4I	CCNGG	1 cut(s)	31
TasI	AATT	2 cut(s)	206, 220
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	4 cut(s)	140, 273, 323, 361
Tru9I	TTAA	4 cut(s)	140, 273, 323, 361
TscAI	CASTG	2 cut(s)	126, 289
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	126, 289
VpaK11BI	GGWCC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	161, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.