Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000469.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

88447 .. 88911

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000469.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ctgtatggtttttcgatcattgggataccttttttgtcgtgtggggtttcaaagttcttgcaaattcagagaagtaactcctcccattctccaattaatgagagctcaaagcccttaagaaccatcacttcatcaaatttgcgagatggttccactaaattcttcgattttactgttattggtagtggagttgctggcctccgttatgccctggaagtggcaaaacatggatctgttgctgtcattaccaaggctgagcctcatgaaagtaatacaaattatgctcaaggtggtgttggtgctgtactgtgcccttcggattctgtggagagtcatgtccaggacaccattgtagcaggagcttatctatgtgatgaggagactgtcagagtatgttatagaacccattgtaaacagggttggtggatctggtatggatctcagaagcaaagcaagggtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

154

Amino Acids

16.75

Weight (kDa)

8.62

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	238, 434, 445
AcsI	RAATTY	3 cut(s)	63, 136, 158
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	210, 339
AluBI	AGCT	2 cut(s)	105, 362
AluI	AGCT	2 cut(s)	105, 362
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	3 cut(s)	238, 434, 445
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	3 cut(s)	63, 136, 158
AseI	ATTAAT	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BccI	CCATC	2 cut(s)	131, 140
BciT130I	CCWGG	2 cut(s)	212, 341
BciVI	GTATCC	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	374
BfrI	CTTAAG	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	212, 341
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	212, 341
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	210, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	212, 341
BseDI	CCNNGG	2 cut(s)	210, 249
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	246, 455
BseRI	GAGGAG	2 cut(s)	70, 392
BseSI	GKGCMC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	107, 314
Bsp143I	GATC	4 cut(s)	15, 230, 426, 437
Bsp1720I	GCTNAGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	247, 454
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	3 cut(s)	238, 434, 445
BspTI	CTTAAG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	210, 249
BssMI	GATC	4 cut(s)	15, 230, 426, 437
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	212, 341
Bst4CI	ACNGT	3 cut(s)	175, 309, 385
BstAFI	CTTAAG	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	255, 441
BstKTI	GATC	4 cut(s)	18, 233, 429, 440
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	4 cut(s)	15, 230, 426, 437
BstNI	CCWGG	2 cut(s)	212, 341
BstSCI	CCNGG	2 cut(s)	210, 339
BstSLI	GKGCMC	1 cut(s)	314
BstX2I	RGATCY	3 cut(s)	230, 426, 437
BstYI	RGATCY	3 cut(s)	230, 426, 437
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	196
CciI	TCATGA	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	3 cut(s)	227, 263, 335
CviJI	RGCY	6 cut(s)	105, 112, 198, 254, 259, 362
CviKI_1	RGCY	6 cut(s)	105, 112, 198, 254, 259, 362
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	255, 441
DpnI	GATC	4 cut(s)	17, 232, 428, 439
DpnII	GATC	4 cut(s)	15, 230, 426, 437
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	210, 339
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	230, 266, 338
FatI	CATG	3 cut(s)	226, 262, 334
FriOI	GRGCYC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	230, 266, 338
HinfI	GANTC	2 cut(s)	320, 331
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	4 cut(s)	69, 319, 389, 444
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	3 cut(s)	175, 309, 385
HpyCH4V	TGCA	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	255, 441
Hsp92II	CATG	3 cut(s)	230, 266, 338
Kzo9I	GATC	4 cut(s)	15, 230, 426, 437
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	8 cut(s)	180, 197, 224, 326, 342, 353, 401, 415
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	4 cut(s)	17, 232, 428, 439
MboI	GATC	4 cut(s)	15, 230, 426, 437
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	3 cut(s)	230, 426, 437
MhlI	GDGCHC	2 cut(s)	107, 314
MluCI	AATT	5 cut(s)	63, 93, 136, 158, 277
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	91, 209, 270, 370
MseI	TTAA	2 cut(s)	96, 116
MspCI	CTTAAG	1 cut(s)	115
MspR9I	CCNGG	2 cut(s)	212, 341
MvaI	CCWGG	2 cut(s)	212, 341
NdeII	GATC	4 cut(s)	15, 230, 426, 437
NlaIII	CATG	3 cut(s)	230, 266, 338
NlaIV	GGNNCC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	339
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PshBI	ATTAAT	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	210, 339
PspGI	CCWGG	2 cut(s)	210, 339
PspN4I	GGNNCC	1 cut(s)	151
PsuI	RGATCY	3 cut(s)	230, 426, 437
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	96, 116
Sau3AI	GATC	4 cut(s)	15, 230, 426, 437
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	212, 341
SduI	GDGCHC	2 cut(s)	107, 314
SetI	ASST	4 cut(s)	31, 107, 292, 364
SmlI	CTYRAG	2 cut(s)	115, 285
SmoI	CTYRAG	2 cut(s)	115, 285
Sse9I	AATT	5 cut(s)	63, 93, 136, 158, 277
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	210, 339
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	175, 309, 385
TaqI	TCGA	2 cut(s)	14, 165
TasI	AATT	5 cut(s)	63, 93, 136, 158, 277
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	96, 116
Tru9I	TTAA	2 cut(s)	96, 116
TspDTI	ATGAA	2 cut(s)	120, 279
TspGWI	ACGGA	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	3 cut(s)	63, 136, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.