FvH4_1g14560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016732
Physical Location & Seq
Reverse (-)
8115324 .. 8115659
336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14560.t1

Sequence Viewer

Length: 336 bp
ATGGCTTTCATCATTTCCAAAGCTCGTCAACAACCTTCTTTCTCGTCAGAGTCTGATCTGCAGAAGCAGAATCACACAAAAGATGGCGATGATCAAGTAGTACAGAGTGACACCATCACAAGCCAGCTCTACTTGAGGTCCTCATCCAATTCTGAAGCAGCAGCTGCCTTGAACAGAGACTTGGTTCTGAGACGGATCCGCCACCATAAGAACTTGAGAAAGGTCAAAACAGCTTTTCAAGCTCTGATGGGAAGCTCAGAGTTACAAGCTAAGACGTCTTCTACTAGTGGCATCAGTTCATGGTTGGACCAAGAGGACAGTTTCTCTTCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.33

Weight (kDa)

9.15

Isoelectric Point (pI)

74.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14560
prunus_persica Prupe.7G144800_v2.0.a1 Prupe.7G144900_v2.0.a1
pyrus_communis pycom02g12550
rosa_chinensis RchiOBHm_Chr2g0103311
rosa_laevigata RLG00000017222
rosa_multiflora Rmu_sc0006743.1_g000006 Rmu_sc0013125.1_g000001
rosa_roxburghii Rroxscaffold_2G00139750
rosa_rugosa Rorug02G0113400
rosa_samantha Rh2AG162100 Rh2BG169100 Rh2CG169000 Rh2DG167900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 278
AciI CCGC 1 cut(s) 199
AclWI GGATC 2 cut(s) 190, 203
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 2 cut(s) 172, 239
AhlI ACTAGT 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 7 cut(s) 23, 127, 164, 233, 242, 255, 269
AluI AGCT 7 cut(s) 23, 127, 164, 233, 242, 255, 269
Alw26I GTCTC 2 cut(s) 171, 184
AlwI GGATC 2 cut(s) 190, 203
AlwNI CAGNNNCTG 2 cut(s) 53, 164
ApeKI GCWGC 3 cut(s) 158, 161, 164
AspS9I GGNCC 2 cut(s) 138, 307
AvaII GGWCC 2 cut(s) 138, 307
BamHI GGATCC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 151, 170, 173
BccI CCATC 3 cut(s) 77, 122, 241
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 171, 184
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 3 cut(s) 159, 162, 165
BlsI GCNGC 3 cut(s) 160, 163, 166
Bme18I GGWCC 2 cut(s) 138, 307
BmgT120I GGNCC 2 cut(s) 138, 307
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 154, 235
BsaHI GRCGYC 1 cut(s) 275
BseGI GGATG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 179, 270
BseXI GCAGC 3 cut(s) 151, 170, 173
BsmAI GTCTC 2 cut(s) 171, 184
BsmBI CGTCTC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 55, 91, 195
BspACI CCGC 1 cut(s) 199
BspCNI CTCAG 2 cut(s) 180, 269
BspLI GGNNCC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 2 cut(s) 190, 203
BssMI GATC 3 cut(s) 55, 91, 195
BssNI GRCGYC 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 331
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 3 cut(s) 188, 256, 270
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 3 cut(s) 58, 94, 198
BstMAI GTCTC 2 cut(s) 171, 184
BstMBI GATC 3 cut(s) 55, 91, 195
BstMWI GCNNNNNNNGC 2 cut(s) 164, 239
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 151, 170, 173
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 2 cut(s) 53, 164
Cfr13I GGNCC 2 cut(s) 138, 307
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 300
CviJI RGCY 9 cut(s) 5, 23, 123, 127, 164, 233, 242, 255, 269
CviKI_1 RGCY 9 cut(s) 5, 23, 123, 127, 164, 233, 242, 255, 269
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 3 cut(s) 188, 256, 270
DpnI GATC 3 cut(s) 57, 93, 197
DpnII GATC 3 cut(s) 55, 91, 195
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
EciI GGCGGA 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 138, 307
Eco57I CTGAAG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 1 cut(s) 303
FaiI YATR 3 cut(s) 207, 301, 334
FatI CATG 1 cut(s) 299
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 159, 162, 165
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 159, 162, 165
FspBI CTAG 1 cut(s) 285
GluI GCNGC 3 cut(s) 159, 162, 165
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 1 cut(s) 303
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 2 cut(s) 50, 70
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 6 cut(s) 49, 55, 154, 189, 246, 259
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 239
HpyF3I CTNAG 3 cut(s) 188, 256, 270
HpySE526I ACGT 1 cut(s) 275
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 55, 91, 195
LpnPI CCDG 1 cut(s) 137
Lsp1109I GCAGC 3 cut(s) 151, 170, 173
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 107, 261
MalI GATC 3 cut(s) 57, 93, 197
MboI GATC 3 cut(s) 55, 91, 195
MboII GAAGA 2 cut(s) 270, 318
MflI RGATCY 1 cut(s) 195
MluCI AATT 1 cut(s) 148
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 3 cut(s) 129, 151, 307
MspA1I CMGCKG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 164, 239
NdeII GATC 3 cut(s) 55, 91, 195
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 160, 163, 166
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 2 cut(s) 138, 307
PspPPI RGGWCCY 1 cut(s) 138
PstI CTGCAG 1 cut(s) 63
PstNI CAGNNNCTG 2 cut(s) 53, 164
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SatI GCNGC 3 cut(s) 159, 162, 165
Sau3AI GATC 3 cut(s) 55, 91, 195
Sau96I GGNCC 2 cut(s) 138, 307
SchI GAGTC 1 cut(s) 59
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 59
SinI GGWCC 2 cut(s) 138, 307
SmlI CTYRAG 2 cut(s) 133, 214
SmoI CTYRAG 2 cut(s) 133, 214
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 199
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 278
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 1 cut(s) 70
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 3 cut(s) 158, 161, 164
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 138, 307
XspI CTAG 1 cut(s) 285
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.