FvH4_1g21090

Sugar (and other) transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012873
Physical Location & Seq
Forward (+)
13130174 .. 13132307
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21090.t1

Sequence Viewer

Length: 915 bp
ATGGGTATAGATGGTTGGAGGATTGCATTCCATATGGTTGGGCTCGTTAGTGTGATAGTCGGGATGTTGGTTCGCCTTTTTGCTAATGATCCACACTACATAGAGAATAATGGTAAAGCGAAAGATGAAATGCCGCCTACTTTTTCCGAAGAAATGAAGGAACTGATTAAAGAATCCAAGTCAGTTATCAAGATCCCCACTTTTCATATACTCATTGCTCAGGGGGTCTTTGGATCATTCCCTTGGTCAGGTTTGTCATTTGCTCCTTTGTGGCTGGAGCTTATTGGTTTCTCCCACAAAGAAACGGCAGTTCTCTGGACCATATTTGTAATTGGCGCCTCACTTGGAAGTCTCTTTGGAGGAAAAATGGGGGATGTCCTTGCAAAACCGTTTCCCAATGCTGGGAGGATAATTCTTTCCCAGATAAGTGCAGGATCAGCCATTCCTTTTGCAGCTCTTTTGCTGCTGGGGTTGCCTGATGACCCATCCACCGGATTCATGCATGGCCTGGTGTTGTTCATCATGGGATGCTTCATTTCCTGGAATGGTGCAGCAACTAACAATCCAATATTTGCAGAGATCGTCCCTGAGAGGTCCCGTACGAGCATTTATGCTCTAGATCAATCTTTTGAATCCATCTTAGCATCATTTGCTCCCCCAGTTGTTGGGATTTTGGTCCAGCACGTTTTTGGTTACAAACCAATTCCTAAAGGATCATCTGACTCTGTAGAGATTGAAACAGATAGAGAGAATGCTGCAGCACTTGCCAAGGCACTCTTTACTACAATGTCAATTCCTATGACACTCTGTGTCTCAATCTATTCGTTCCTTTACTGCACATACCCGAGAGACAGGGAACGGGCAAAAATGCAGGCTTTGATAGAATCAGAAATGCAACAGCTGGAAACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

305

Amino Acids

33.24

Weight (kDa)

5.55

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 219 7.2e-16 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10190 AT5G10190 AT5G10190
fragaria_vesca FvH4_1g21090 FvH4_1g21100
malus_domestica MD01G1027800.v1.1
prunus_persica Prupe.6G183300_v2.0.a1
pyrus_communis pycom01g05610
rosa_chinensis RchiOBHm_Chr2g0114881
rosa_laevigata RLG00000018122 RLG00000018130
rosa_multiflora Rmu_sc0002764.1_g000041
rosa_roxburghii Rroxscaffold_2G00130370
rosa_rugosa Rorug02G0191300
rosa_samantha Rh2AG249900 Rh2CG254300 Rh2DG258100
rosa_wichuraiana Rw2G019470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 665
AciI CCGC 1 cut(s) 134
AclWI GGATC 5 cut(s) 83, 187, 241, 442, 721
AcyI GRCGYC 1 cut(s) 336
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 5 cut(s) 248, 401, 402, 491, 665
AgsI TTSAA 2 cut(s) 632, 737
AhlI ACTAGT 1 cut(s) 908
AjnI CCWGG 2 cut(s) 507, 539
AluBI AGCT 3 cut(s) 280, 455, 901
AluI AGCT 3 cut(s) 280, 455, 901
Alw26I GTCTC 3 cut(s) 356, 817, 843
AlwI GGATC 5 cut(s) 83, 187, 241, 442, 721
Ama87I CYCGRG 1 cut(s) 844
AoxI GGCC 1 cut(s) 505
ApeKI GCWGC 5 cut(s) 452, 463, 551, 755, 758
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 3 cut(s) 318, 594, 676
AvaI CYCGRG 1 cut(s) 844
AvaII GGWCC 3 cut(s) 318, 594, 676
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 45
BbvI GCAGC 5 cut(s) 450, 464, 563, 742, 770
BccI CCATC 3 cut(s) 5, 493, 644
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 2 cut(s) 509, 541
BcoDI GTCTC 3 cut(s) 356, 817, 843
BcuI ACTAGT 1 cut(s) 908
BfaI CTAG 2 cut(s) 617, 909
BfmI CTRYAG 2 cut(s) 726, 756
BfoI RGCGCY 1 cut(s) 339
BisI GCNGC 6 cut(s) 134, 453, 464, 552, 756, 759
BlsI GCNGC 6 cut(s) 135, 454, 465, 553, 757, 760
Bme1390I CCNGG 2 cut(s) 509, 541
Bme18I GGWCC 3 cut(s) 318, 594, 676
BmeT110I CYCGRG 1 cut(s) 844
BmgT120I GGNCC 3 cut(s) 318, 594, 676
BmiI GGNNCC 2 cut(s) 337, 596
BmrFI CCNGG 2 cut(s) 509, 541
BmrI ACTGGG 1 cut(s) 653
BmsI GCATC 2 cut(s) 518, 653
BmuI ACTGGG 1 cut(s) 653
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 242, 768
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 401, 402, 491, 665
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 509, 541
BseDI CCNNGG 2 cut(s) 242, 768
BseGI GGATG 4 cut(s) 69, 379, 485, 533
BseLI CCNNNNNNNGG 5 cut(s) 248, 401, 402, 491, 665
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 233, 579
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 5 cut(s) 450, 464, 563, 742, 770
BseYI CCCAGC 2 cut(s) 401, 466
BsgI GTGCAG 3 cut(s) 450, 570, 820
BshFI GGCC 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 844
BsiSI CCGG 1 cut(s) 492
BsiWI CGTACG 1 cut(s) 599
BslFI GGGAC 2 cut(s) 569, 580
BslI CCNNNNNNNGG 5 cut(s) 248, 401, 402, 491, 665
BsmAI GTCTC 3 cut(s) 356, 817, 843
BsmFI GGGAC 2 cut(s) 569, 580
BsmI GAATGC 2 cut(s) 26, 757
BsnI GGCC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 507
BspCNI CTCAG 2 cut(s) 232, 580
BspLI GGNNCC 2 cut(s) 337, 596
BspMAI CTGCAG 1 cut(s) 760
BspPI GGATC 5 cut(s) 83, 187, 241, 442, 721
BspT107I GGYRCC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 2 cut(s) 242, 768
BssMI GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 2 cut(s) 242, 768
Bst2UI CCWGG 2 cut(s) 509, 541
Bst4CI ACNGT 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 336
BstAPI GCANNNNNTGC 2 cut(s) 650, 764
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 3 cut(s) 219, 588, 640
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 4 cut(s) 69, 379, 485, 533
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 7 cut(s) 91, 195, 236, 437, 582, 622, 716
BstMAI GTCTC 3 cut(s) 356, 817, 843
BstMBI GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
BstMWI GCNNNNNNNGC 4 cut(s) 437, 472, 650, 764
BstNI CCWGG 2 cut(s) 509, 541
BstSCI CCNGG 2 cut(s) 507, 539
BstSFI CTRYAG 2 cut(s) 726, 756
BstV1I GCAGC 5 cut(s) 450, 464, 563, 742, 770
BstX2I RGATCY 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 507
BtsCI GGATG 4 cut(s) 69, 379, 485, 533
Cac8I GCNNGC 1 cut(s) 873
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 3 cut(s) 318, 594, 676
Csp6I GTAC 1 cut(s) 600
CviAII CATG 3 cut(s) 499, 503, 523
CviJI RGCY 8 cut(s) 43, 274, 280, 440, 455, 507, 875, 901
CviKI_1 RGCY 8 cut(s) 43, 274, 280, 440, 455, 507, 875, 901
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 3 cut(s) 219, 588, 640
DinI GGCGCC 1 cut(s) 337
DpnI GATC 7 cut(s) 90, 194, 235, 436, 581, 621, 715
DpnII GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
DraIII CACNNNGTG 1 cut(s) 809
Eco130I CCWWGG 2 cut(s) 242, 768
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 3 cut(s) 318, 594, 676
Eco88I CYCGRG 1 cut(s) 844
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 594
EcoRII CCWGG 2 cut(s) 507, 539
EcoT14I CCWWGG 2 cut(s) 242, 768
EcoT22I ATGCAT 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 242, 768
FaeI CATG 3 cut(s) 502, 506, 526
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FaqI GGGAC 2 cut(s) 569, 580
FatI CATG 3 cut(s) 498, 502, 522
FauNDI CATATG 1 cut(s) 33
Fnu4HI GCNGC 6 cut(s) 134, 453, 464, 552, 756, 759
FokI GGATG 4 cut(s) 76, 386, 472, 540
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 6 cut(s) 134, 453, 464, 552, 756, 759
FspBI CTAG 2 cut(s) 617, 909
GlaI GCGC 1 cut(s) 337
GluI GCNGC 6 cut(s) 134, 453, 464, 552, 756, 759
GsaI CCCAGC 2 cut(s) 405, 470
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 1 cut(s) 507
HapII CCGG 1 cut(s) 492
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 3 cut(s) 502, 506, 526
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 5 cut(s) 173, 495, 632, 722, 884
HpaII CCGG 1 cut(s) 492
Hpy188I TCNGA 3 cut(s) 148, 721, 889
Hpy188III TCNNGA 4 cut(s) 61, 190, 316, 617
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 1 cut(s) 684
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 472, 650, 764
HpyF3I CTNAG 3 cut(s) 219, 588, 640
HpySE526I ACGT 1 cut(s) 684
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 3 cut(s) 502, 506, 526
HspAI GCGC 1 cut(s) 336
KasI GGCGCC 1 cut(s) 335
Kzo9I GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
LmnI GCTCC 3 cut(s) 268, 277, 658
Lsp1109I GCAGC 5 cut(s) 450, 464, 563, 742, 770
LweI GCATC 2 cut(s) 518, 653
MaeI CTAG 2 cut(s) 617, 909
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 1 cut(s) 692
MalI GATC 7 cut(s) 90, 194, 235, 436, 581, 621, 715
MboI GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 4 cut(s) 330, 411, 702, 792
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 1 cut(s) 716
MnlI CCTC 5 cut(s) 12, 349, 353, 399, 585
Mph1103I ATGCAT 1 cut(s) 504
MseI TTAA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 509, 541
Mva1269I GAATGC 2 cut(s) 26, 757
MvaI CCWGG 2 cut(s) 509, 541
MwoI GCNNNNNNNGC 4 cut(s) 437, 472, 650, 764
NarI GGCGCC 1 cut(s) 336
NdeI CATATG 1 cut(s) 33
NdeII GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
NlaIII CATG 3 cut(s) 502, 506, 526
NlaIV GGNNCC 2 cut(s) 337, 596
NsiI ATGCAT 1 cut(s) 504
PctI GAATGC 2 cut(s) 26, 757
PfeI GAWTC 4 cut(s) 173, 495, 632, 884
Pfl23II CGTACG 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 539
PkrI GCNGC 6 cut(s) 135, 454, 465, 553, 757, 760
PleI GAGTC 1 cut(s) 716
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 716
PpuMI RGGWCCY 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 507, 539
PspFI CCCAGC 2 cut(s) 401, 466
PspGI CCWGG 2 cut(s) 507, 539
PspLI CGTACG 1 cut(s) 599
PspN4I GGNNCC 2 cut(s) 337, 596
PspPI GGNCC 3 cut(s) 318, 594, 676
PspPPI RGGWCCY 1 cut(s) 594
PstI CTGCAG 1 cut(s) 760
PsuI RGATCY 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 6 cut(s) 134, 453, 464, 552, 756, 759
Sau3AI GATC 7 cut(s) 88, 192, 233, 434, 579, 619, 713
Sau96I GGNCC 3 cut(s) 318, 594, 676
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 2 cut(s) 509, 541
SduI GDGCHC 1 cut(s) 45
SetI ASST 6 cut(s) 253, 282, 457, 596, 687, 903
SfaNI GCATC 2 cut(s) 518, 653
SfcI CTRYAG 2 cut(s) 726, 756
SfoI GGCGCC 1 cut(s) 337
SinI GGWCC 3 cut(s) 318, 594, 676
SpeI ACTAGT 1 cut(s) 908
Sse9I AATT 4 cut(s) 330, 411, 702, 792
SsiI CCGC 1 cut(s) 134
SspDI GGCGCC 1 cut(s) 335
SspI AATATT 1 cut(s) 570
SspMI CTAG 2 cut(s) 617, 909
StyD4I CCNGG 2 cut(s) 507, 539
StyI CCWWGG 2 cut(s) 242, 768
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 1 cut(s) 687
TasI AATT 4 cut(s) 330, 411, 702, 792
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 4 cut(s) 173, 495, 632, 884
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 5 cut(s) 452, 463, 551, 755, 758
TspDTI ATGAA 6 cut(s) 141, 170, 194, 487, 508, 523
Van91I CCANNNNNTGG 1 cut(s) 665
VpaK11BI GGWCC 3 cut(s) 318, 594, 676
XagI CCTNNNNNAGG 1 cut(s) 246
XbaI TCTAGA 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XspI CTAG 2 cut(s) 617, 909
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.