RLG00000018122

Sugar (and other) transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012873
Physical Location & Seq
Forward (+)
25529421 .. 25532982
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018122

Sequence Viewer

Length: 876 bp
ATGCAGCGAGCTGATGAGTCCCTATTGCCAGGAGTCTACAAAGAAGTAGGAGCCTCTCTTCACACAGACCCAACTGGGTTGGGCACTCTGACTCTGTTCAGATCCATTGTCCAATCCTCCTGCTACCCACTTGCTGCTTATCTTGCTATGTGTCACAGCCGAGCCCATGTCATTGCTCTTGGTGCTTTTCTTTGGGCTGCGGCCACTTCTTGTTGGCTTCCCTCTACTTTCCTTCAGGTAGCTATTTCAAGAGGTTTAAATGGTGTTGGACTTGCCACAGTCATTCCTGCCGTGCAGTCACTTGTTGCTGACTCAGCAGATGATAATAACCATGGTACAACATTTGGATGGTTACAACTAACAGGAAATCTATGCTCCATAATAGTTGGGCTCATTAGTGTCATAGTCGGTATATTGGTTCGCCTCTTTGCTAATGATCCACACTATGTACAGAACAATGATAGAGCTAAAGATGAAATGCCACATACTTTTTCAGAAGAAGTGAAGGACCTGATTAAAGAATCCAAGTTGGTTATCAAAATCCCAGCTTTTCAAATACTCATTGCTCAGGGTGTCTTTGGACCATTCCCCTGGTCAGGTTTGTCATTTGCTTCTTTGTGGTTGGAGCTTATCGGCTTCTCCCACAAAGAAACGGCAGTTCTTTGGACCATATTTATAATTGGCGCCTCACTTGGAAGTCTCTTTGGAGGAAAAATGGGGGATGTCCTTGCAAAACCGTTTCCCAATGCTAGGAGGATAGTTCTTTCACAGATAAGTGCAGGATCAGCCATTCCTTTTGCAACTCTTTTGCTGGGGTTGCCTGATGACCCATCCACCGGCTTCATGCATGGGCTGGTATTGTTCATCATGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

292

Amino Acids

31.13

Weight (kDa)

6.22

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 132 1.3e-15 Major Facilitator Superfamily
MFS_1 PF07690 127 - 291 8.7e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10190 AT5G10190 AT5G10190
fragaria_vesca FvH4_1g21090 FvH4_1g21100
malus_domestica MD01G1027800.v1.1
prunus_persica Prupe.6G183300_v2.0.a1
pyrus_communis pycom01g05610
rosa_chinensis RchiOBHm_Chr2g0114881
rosa_laevigata RLG00000018122 RLG00000018130
rosa_multiflora Rmu_sc0002764.1_g000041
rosa_roxburghii Rroxscaffold_2G00130370
rosa_rugosa Rorug02G0191300
rosa_samantha Rh2AG249900 Rh2CG254300 Rh2DG258100
rosa_wichuraiana Rw2G019470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
AccB1I GGYRCC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 36
AciI CCGC 1 cut(s) 200
AclWI GGATC 3 cut(s) 96, 431, 790
AcoI YGGCCR 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 2 cut(s) 337, 450
AfiI CCNNNNNNNGG 3 cut(s) 596, 750, 836
AgsI TTSAA 2 cut(s) 249, 554
AjnI CCWGG 2 cut(s) 28, 590
AluBI AGCT 5 cut(s) 11, 242, 467, 548, 628
AluI AGCT 5 cut(s) 11, 242, 467, 548, 628
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 3 cut(s) 96, 431, 790
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 3 cut(s) 4, 134, 197
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 3 cut(s) 508, 581, 666
AvaII GGWCC 3 cut(s) 508, 581, 666
BaeGI GKGCMC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 2 cut(s) 166, 393
BbvI GCAGC 3 cut(s) 16, 121, 184
BccI CCATC 2 cut(s) 342, 838
BceAI ACGGC 2 cut(s) 275, 669
BciT130I CCWGG 2 cut(s) 30, 592
BcoDI GTCTC 1 cut(s) 704
BfaI CTAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 687
BisI GCNGC 4 cut(s) 5, 135, 198, 201
BlsI GCNGC 4 cut(s) 6, 136, 199, 202
Bme1390I CCNGG 2 cut(s) 30, 592
Bme18I GGWCC 3 cut(s) 508, 581, 666
BmgT120I GGNCC 3 cut(s) 508, 581, 666
BmiI GGNNCC 2 cut(s) 52, 685
BmrFI CCNGG 2 cut(s) 30, 592
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 331, 590
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 750, 836
Bse118I RCCGGY 1 cut(s) 836
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 2 cut(s) 171, 561
BseBI CCWGG 2 cut(s) 30, 592
BseDI CCNNGG 2 cut(s) 331, 590
BseGI GGATG 3 cut(s) 353, 727, 830
BseLI CCNNNNNNNGG 3 cut(s) 596, 750, 836
BseMI GCAATG 2 cut(s) 171, 561
BseMII CTCAG 2 cut(s) 327, 581
BseNI ACTGG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 3 cut(s) 16, 121, 184
BseYI CCCAGC 2 cut(s) 544, 811
BsgI GTGCAG 2 cut(s) 314, 798
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 683
BsiSI CCGG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 3 cut(s) 596, 750, 836
BsmAI GTCTC 1 cut(s) 704
BsmFI GGGAC 1 cut(s) 4
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 86, 166, 393
Bsp1407I TGTACA 1 cut(s) 448
Bsp143I GATC 3 cut(s) 101, 436, 782
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 326, 580
BspLI GGNNCC 2 cut(s) 52, 685
BspPI GGATC 3 cut(s) 96, 431, 790
BspT107I GGYRCC 1 cut(s) 683
BsrDI GCAATG 2 cut(s) 171, 561
BsrFI RCCGGY 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 448
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 836
BssECI CCNNGG 2 cut(s) 331, 590
BssMI GATC 3 cut(s) 101, 436, 782
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 30, 592
Bst4CI ACNGT 2 cut(s) 280, 738
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 684
BstAUI TGTACA 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 313, 567
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 353, 727, 830
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 3 cut(s) 104, 439, 785
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 3 cut(s) 101, 436, 782
BstMWI GCNNNNNNNGC 5 cut(s) 143, 182, 314, 785, 817
BstNI CCWGG 2 cut(s) 30, 592
BstSCI CCNGG 2 cut(s) 28, 590
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 3 cut(s) 16, 121, 184
BstX2I RGATCY 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 353, 727, 830
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 686
Cfr10I RCCGGY 1 cut(s) 836
Cfr13I GGNCC 3 cut(s) 508, 581, 666
Csp6I GTAC 2 cut(s) 336, 449
CviAII CATG 5 cut(s) 167, 332, 844, 848, 868
CviQI GTAC 2 cut(s) 336, 449
DdeI CTNAG 2 cut(s) 313, 567
DinI GGCGCC 1 cut(s) 685
DpnI GATC 3 cut(s) 103, 438, 784
DpnII GATC 3 cut(s) 101, 436, 782
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 2 cut(s) 166, 393
Eco47I GGWCC 3 cut(s) 508, 581, 666
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 28, 590
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 849
EcoT38I GRGCYC 2 cut(s) 166, 393
EgeI GGCGCC 1 cut(s) 685
EheI GGCGCC 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 5 cut(s) 170, 335, 847, 851, 871
FaqI GGGAC 1 cut(s) 4
FatI CATG 5 cut(s) 166, 331, 843, 847, 867
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 4 cut(s) 5, 135, 198, 201
FokI GGATG 3 cut(s) 360, 734, 817
FriOI GRGCYC 2 cut(s) 166, 393
Fsp4HI GCNGC 4 cut(s) 5, 135, 198, 201
FspBI CTAG 1 cut(s) 750
GlaI GCGC 1 cut(s) 685
GluI GCNGC 4 cut(s) 5, 135, 198, 201
GsaI CCCAGC 2 cut(s) 548, 815
HaeII RGCGCY 1 cut(s) 687
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 837
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 5 cut(s) 170, 335, 847, 851, 871
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HinfI GANTC 5 cut(s) 17, 33, 91, 311, 521
HpaII CCGG 1 cut(s) 837
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 90, 101, 496
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 242, 499
HpyCH4III ACNGT 2 cut(s) 280, 738
HpyCH4V TGCA 6 cut(s) 4, 295, 731, 779, 800, 847
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 182, 314, 785, 817
HpyF3I CTNAG 2 cut(s) 313, 567
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 5 cut(s) 170, 335, 847, 851, 871
HspAI GCGC 1 cut(s) 684
KasI GGCGCC 1 cut(s) 683
Kzo9I GATC 3 cut(s) 101, 436, 782
LmnI GCTCC 3 cut(s) 50, 380, 625
Lsp1109I GCAGC 3 cut(s) 16, 121, 184
MaeI CTAG 1 cut(s) 750
MaeIII GTNAC 3 cut(s) 152, 297, 351
MalI GATC 3 cut(s) 103, 438, 784
MboI GATC 3 cut(s) 101, 436, 782
MboII GAAGA 2 cut(s) 50, 509
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 3 cut(s) 86, 166, 393
MluCI AATT 1 cut(s) 678
Mly113I GGCGCC 1 cut(s) 684
MlyI GAGTC 4 cut(s) 26, 42, 85, 305
MmeI TCCRAC 2 cut(s) 247, 603
MnlI CCTC 8 cut(s) 64, 127, 232, 245, 434, 697, 701, 747
Mph1103I ATGCAT 1 cut(s) 849
MseI TTAA 2 cut(s) 257, 516
MslI CAYNNNNRTG 1 cut(s) 346
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 2 cut(s) 30, 592
MvaI CCWGG 2 cut(s) 30, 592
MwoI GCNNNNNNNGC 5 cut(s) 143, 182, 314, 785, 817
NarI GGCGCC 1 cut(s) 684
NcoI CCATGG 1 cut(s) 331
NdeII GATC 3 cut(s) 101, 436, 782
NlaIII CATG 5 cut(s) 170, 335, 847, 851, 871
NlaIV GGNNCC 2 cut(s) 52, 685
NmeAIII GCCGAG 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 152, 297
NsiI ATGCAT 1 cut(s) 849
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 4 cut(s) 6, 136, 199, 202
PleI GAGTC 4 cut(s) 25, 41, 85, 305
PluTI GGCGCC 1 cut(s) 687
PpsI GAGTC 4 cut(s) 25, 41, 85, 305
PpuMI RGGWCCY 1 cut(s) 508
PsiI TTATAA 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 28, 590
PspFI CCCAGC 2 cut(s) 544, 811
PspGI CCWGG 2 cut(s) 28, 590
PspN4I GGNNCC 2 cut(s) 52, 685
PspPI GGNCC 3 cut(s) 508, 581, 666
PspPPI RGGWCCY 1 cut(s) 508
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 2 cut(s) 337, 450
RsaNI GTAC 2 cut(s) 336, 449
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 2 cut(s) 257, 516
SatI GCNGC 4 cut(s) 5, 135, 198, 201
Sau3AI GATC 3 cut(s) 101, 436, 782
Sau96I GGNCC 3 cut(s) 508, 581, 666
SchI GAGTC 4 cut(s) 26, 42, 85, 305
ScrFI CCNGG 2 cut(s) 30, 592
SduI GDGCHC 3 cut(s) 86, 166, 393
SetI ASST 9 cut(s) 13, 240, 244, 256, 469, 513, 550, 601, 630
SfoI GGCGCC 1 cut(s) 685
SinI GGWCC 3 cut(s) 508, 581, 666
SmiMI CAYNNNNRTG 1 cut(s) 346
Sse9I AATT 1 cut(s) 678
SsiI CCGC 1 cut(s) 200
SspDI GGCGCC 1 cut(s) 683
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 28, 590
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 280, 738
TasI AATT 1 cut(s) 678
TatI WGTACW 1 cut(s) 448
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 257, 516
Tru9I TTAA 2 cut(s) 257, 516
TseFI GTSAC 2 cut(s) 152, 297
TseI GCWGC 3 cut(s) 4, 134, 197
Tsp45I GTSAC 2 cut(s) 152, 297
TspDTI ATGAA 3 cut(s) 489, 832, 853
VpaK11BI GGWCC 3 cut(s) 508, 581, 666
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.