FvH4_1g21190

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
13183238 .. 13184203
966 bp
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UTR
Exon/CDS
Intron
FvH4_1g21190.t1

Sequence Viewer

Length: 324 bp
ATGGATCACCAAACGAAAGAGGAACAACAAGGAAAAGAAAGAAACAAAGAAGAGCAGAGCAAAATCAAATCAAAAAGGAGGAGAAAATTGAAATCGTATCGGCAGAGAAAGAGAACTCTTACGGGTGGAACTGGTTGGTATGATTCACGCCTTAAGACTGACTTGAGAACGTACGCAAGAGTCACACTTTGTGATTTAGGCTTAGAGGGAAGATTGACTATTAGACTTATTCGGCTGAGGTTGGAACAAAGCCAAACAAATTCGGCTGATATGGAACGAAACCAAATACAAATTTGCCTGAGGGTGGAACTGCTAATCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.81

Weight (kDa)

10.19

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023967)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02350 FvH4_1g21190 FvH4_1g28140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 259, 291
AdeI CACNNNGTG 1 cut(s) 191
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 304
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 91
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 2 cut(s) 259, 291
AxyI CCTNAGG 1 cut(s) 299
BbvCI CCTCAGC 1 cut(s) 236
BfrI CTTAAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 227, 290
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 94
BsiWI CGTACG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 304
Bsp143I GATC 1 cut(s) 4
BspCNI CTCAG 2 cut(s) 228, 291
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 152
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 202, 236, 299
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 299
Csp6I GTAC 1 cut(s) 172
CviJI RGCY 4 cut(s) 201, 235, 252, 266
CviKI_1 RGCY 4 cut(s) 201, 235, 252, 266
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 3 cut(s) 202, 236, 299
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 299
FaiI YATR 2 cut(s) 141, 272
FalI AAGNNNNNCTT 2 cut(s) 146, 178
HinfI GANTC 2 cut(s) 143, 180
HpyCH4IV ACGT 1 cut(s) 170
HpyF3I CTNAG 3 cut(s) 202, 236, 299
HpySE526I ACGT 1 cut(s) 170
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 117, 311
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 62, 222
MluCI AATT 3 cut(s) 86, 259, 291
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 5 cut(s) 13, 72, 199, 231, 294
MseI TTAA 1 cut(s) 153
MspCI CTTAAG 1 cut(s) 152
NdeII GATC 1 cut(s) 4
NmuCI GTSAC 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 143
Pfl23II CGTACG 1 cut(s) 171
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspLI CGTACG 1 cut(s) 171
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 189
SetI ASST 2 cut(s) 173, 242
SgeI CNNG 7 cut(s) 41, 135, 144, 159, 175, 189, 310
SmlI CTYRAG 2 cut(s) 152, 163
SmoI CTYRAG 2 cut(s) 152, 163
Sse9I AATT 3 cut(s) 86, 259, 291
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 86, 259, 291
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 2 cut(s) 259, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.