FvH4_1g28140

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0023967
Physical Location & Seq
Reverse (-)
20000885 .. 20003335
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28140.t1

Sequence Viewer

Length: 351 bp
ATGGATCAGAAGAAGCAAACGACAAAGGAACAAAAAGGAGAAGAAAGAAACAAAGACGAGCAGAGCAAAATTGAATCAAAAAGAAGGAGAAAATTGAAGCATCTTATCGGCAGACGTGGGATTTGCCATCTAAAGAAAACTCATACGGGTGGAATAAAAAAACATATCGATGCGGACCTGTACATCCACGCGTTAAGGCCGGTATCTGAGCAGTTATGCTTCCAGGAAACCCCTTTGTACTTTTCCATCGGAACTAAAGGTTTTGCCGGAGTGAACAAAGGAGGACAGATCCGCCACTTCTTTCATCGACCCTCAAAGGCCTATACCGTCTTATTTTTCAGATTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

117

Amino Acids

13.56

Weight (kDa)

10.23

Isoelectric Point (pI)

61.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023967)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02350 FvH4_1g21190 FvH4_1g28140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 173, 292
AclWI GGATC 2 cut(s) 12, 283
AfaI GTAC 2 cut(s) 182, 239
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 2 cut(s) 74, 97
AjiI CACGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 222
AlwI GGATC 2 cut(s) 12, 283
AoxI GGCC 2 cut(s) 197, 318
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AseI ATTAAT 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
BccI CCATC 2 cut(s) 135, 254
BciT130I CCWGG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 109, 160
Bsa29I ATCGAT 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 199
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 168
BseGI GGATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 199, 320
BshVI ATCGAT 1 cut(s) 168
BsiSI CCGG 2 cut(s) 200, 267
BsnI GGCC 2 cut(s) 199, 320
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 4, 288
BspACI CCGC 2 cut(s) 173, 292
BspANI GGCC 2 cut(s) 199, 320
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 191
BspPI GGATC 2 cut(s) 12, 283
BsrFI RCCGGY 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 2 cut(s) 4, 288
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 328
BstAUI TGTACA 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 2 cut(s) 7, 291
BstMBI GATC 2 cut(s) 4, 288
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 2 cut(s) 199, 320
BsuTUI ATCGAT 1 cut(s) 168
BtrI CACGTC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 2 cut(s) 181, 238
CviJI RGCY 2 cut(s) 199, 320
CviKI_1 RGCY 2 cut(s) 199, 320
CviQI GTAC 2 cut(s) 181, 238
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 6, 290
DpnII GATC 2 cut(s) 4, 288
EciI GGCGGA 1 cut(s) 281
Eco147I AGGCCT 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 222
FaiI YATR 5 cut(s) 144, 165, 217, 324, 349
FokI GGATG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 199, 320
HapII CCGG 2 cut(s) 200, 267
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 200, 267
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 9, 208, 251, 341
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 115
Kzo9I GATC 2 cut(s) 4, 288
LpnPI CCDG 5 cut(s) 191, 209, 213, 236, 280
LweI GCATC 2 cut(s) 109, 160
MaeII ACGT 1 cut(s) 115
MalI GATC 2 cut(s) 6, 290
MboI GATC 2 cut(s) 4, 288
MboII GAAGA 2 cut(s) 22, 53
MflI RGATCY 1 cut(s) 288
MluCI AATT 2 cut(s) 69, 92
MluI ACGCGT 1 cut(s) 189
MnlI CCTC 2 cut(s) 275, 322
MseI TTAA 2 cut(s) 194, 344
MslI CAYNNNNRTG 2 cut(s) 147, 168
MspI CCGG 2 cut(s) 200, 267
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 191
NdeII GATC 2 cut(s) 4, 288
PceI AGGCCT 1 cut(s) 320
PfeI GAWTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 2 cut(s) 182, 239
RsaNI GTAC 2 cut(s) 181, 238
RseI CAYNNNNRTG 2 cut(s) 147, 168
SaqAI TTAA 2 cut(s) 194, 344
Sau3AI GATC 2 cut(s) 4, 288
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 224
SetI ASST 3 cut(s) 118, 180, 262
SfaNI GCATC 2 cut(s) 109, 160
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 147, 168
Sse9I AATT 2 cut(s) 69, 92
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 2 cut(s) 173, 292
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 168, 307
TasI AATT 2 cut(s) 69, 92
TatI WGTACW 2 cut(s) 180, 237
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 194, 344
Tru9I TTAA 2 cut(s) 194, 344
TspDTI ATGAA 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 175
VspI ATTAAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.