FvH4_1g25730
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0024001
Physical Location & Seq
Reverse (-)
17616882 .. 17618392
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25730.t1

Sequence Viewer

Length: 480 bp
ATGGTAGATTGTAGCATTGGAGTAGAAGTACTTAGTTTCACCTCTATGCTGGGATCTCATCTGCTACTAAATAAAGGGATCCAGACCGACCCGCTCCGGAAGGTTCTCGACACATGGACCGACTCTTCACTCACTCTTTCTCAGTCTTGCCCTCCGTGGACCGGCGTCTACTGCAACGACGTCGGCAATGTCGTCACCGTCACACTTGACGGCTTCGGCCTCAGTGGCGAGCTTAAGCCGAACACTCTCACTGGTCTAATTGCGTTGCAAAACCTCAGTCTTGCTAACAATGACTTCTCCGGTCAGGTCCCGCCGGGGCTGGGAGCAATGTCCTCTCTCAAGTACTTGGATCTATCCCAAAACCAGTTTTATGGCCCGATCCCGGCCCGGATAACCGACCTGTGGGGATTGAATTATCTCAACTTGTCTCGGAATCTATTCCGTCGCACTCGATTTTTCCGGTACTACAGTCGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

160

Amino Acids

17.53

Weight (kDa)

7.69

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024001)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25730
malus_domestica MD01G1018100.v1.1
rosa_samantha Rh5BG123000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccBSI CCGCTC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 2 cut(s) 92, 311
AclWI GGATC 5 cut(s) 61, 73, 86, 357, 373
AcyI GRCGYC 2 cut(s) 165, 180
AfaI GTAC 3 cut(s) 30, 344, 464
AfiI CCNNNNNNNGG 4 cut(s) 161, 320, 382, 402
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 412
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 5 cut(s) 61, 73, 86, 357, 373
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 3 cut(s) 217, 373, 384
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp700I GAANNNNTTC 1 cut(s) 437
AspS9I GGNCC 5 cut(s) 117, 159, 307, 374, 385
AsuC2I CCSGG 3 cut(s) 315, 383, 388
AsuHPI GGTGA 2 cut(s) 31, 187
AvaII GGWCC 3 cut(s) 117, 159, 307
BaeI ACNNNNGTAYC 1 cut(s) 454
BamHI GGATCC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BcnI CCSGG 3 cut(s) 315, 383, 388
BcoDI GTCTC 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 466
BfrI CTTAAG 1 cut(s) 233
BglI GCCNNNNNGGC 1 cut(s) 225
BmcAI AGTACT 2 cut(s) 30, 344
Bme1390I CCNGG 3 cut(s) 315, 383, 388
Bme18I GGWCC 3 cut(s) 117, 159, 307
BmgT120I GGNCC 5 cut(s) 117, 159, 307, 374, 385
BmiI GGNNCC 2 cut(s) 80, 309
BmrFI CCNGG 3 cut(s) 315, 383, 388
BoxI GACNNNNGTC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 3 cut(s) 315, 383, 388
BsaHI GRCGYC 2 cut(s) 165, 180
BsaJI CCNNGG 2 cut(s) 155, 314
BsaWI WCCGGW 3 cut(s) 96, 299, 459
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 320, 382, 402
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 256, 364
Bse3DI GCAATG 2 cut(s) 193, 333
BseAI TCCGGA 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 155, 314
BseLI CCNNNNNNNGG 4 cut(s) 161, 320, 382, 402
BseMI GCAATG 2 cut(s) 193, 333
BseMII CTCAG 3 cut(s) 155, 235, 289
BseNI ACTGG 2 cut(s) 256, 364
BseYI CCCAGC 2 cut(s) 49, 319
BshFI GGCC 3 cut(s) 219, 375, 386
BsiSI CCGG 7 cut(s) 97, 162, 300, 314, 383, 388, 460
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 4 cut(s) 161, 320, 382, 402
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 3 cut(s) 219, 375, 386
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 4 cut(s) 53, 78, 349, 378
BspACI CCGC 2 cut(s) 92, 311
BspANI GGCC 3 cut(s) 219, 375, 386
BspCNI CTCAG 3 cut(s) 154, 234, 288
BspEI TCCGGA 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 80, 309
BspPI GGATC 5 cut(s) 61, 73, 86, 357, 373
BspTI CTTAAG 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 2 cut(s) 193, 333
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 256, 364
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 155, 314
BssMI GATC 4 cut(s) 53, 78, 349, 378
BssNI GRCGYC 2 cut(s) 165, 180
Bst4CI ACNGT 2 cut(s) 199, 470
Bst6I CTCTTC 1 cut(s) 130
BstACI GRCGYC 2 cut(s) 165, 180
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 4 cut(s) 32, 141, 221, 275
BstDSI CCRYGG 1 cut(s) 155
BstKTI GATC 4 cut(s) 56, 81, 352, 381
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 4 cut(s) 53, 78, 349, 378
BstMWI GCNNNNNNNGC 2 cut(s) 171, 225
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 3 cut(s) 313, 381, 386
BstSFI CTRYAG 1 cut(s) 466
BstX2I RGATCY 3 cut(s) 53, 78, 349
BstXI CCANNNNNNTGG 1 cut(s) 371
BstYI RGATCY 3 cut(s) 53, 78, 349
BsuRI GGCC 3 cut(s) 219, 375, 386
BtgI CCRYGG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 229, 249
Cac8I GCNNGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 5 cut(s) 117, 159, 307, 374, 385
CseI GACGC 1 cut(s) 154
Csp6I GTAC 3 cut(s) 29, 343, 463
CviAII CATG 1 cut(s) 114
CviJI RGCY 7 cut(s) 213, 219, 232, 238, 319, 375, 386
CviKI_1 RGCY 7 cut(s) 213, 219, 232, 238, 319, 375, 386
CviQI GTAC 3 cut(s) 29, 343, 463
DdeI CTNAG 4 cut(s) 32, 141, 221, 275
DpnI GATC 4 cut(s) 55, 80, 351, 380
DpnII GATC 4 cut(s) 53, 78, 349, 378
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco47I GGWCC 3 cut(s) 117, 159, 307
EcoO109I RGGNCCY 1 cut(s) 307
FaeI CATG 1 cut(s) 117
FaiI YATR 3 cut(s) 47, 115, 372
FaqI GGGAC 1 cut(s) 293
FatI CATG 1 cut(s) 113
FauI CCCGC 2 cut(s) 99, 318
FblI GTMKAC 1 cut(s) 168
GsaI CCCAGC 2 cut(s) 53, 323
HaeIII GGCC 3 cut(s) 219, 375, 386
HapII CCGG 7 cut(s) 97, 162, 300, 314, 383, 388, 460
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 2 cut(s) 165, 180
Hin1II CATG 1 cut(s) 117
HinfI GANTC 2 cut(s) 122, 433
HpaII CCGG 7 cut(s) 97, 162, 300, 314, 383, 388, 460
HphI GGTGA 2 cut(s) 31, 187
Hpy166II GTNNAC 2 cut(s) 159, 169
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 3 cut(s) 82, 97, 107
Hpy8I GTNNAC 2 cut(s) 159, 169
Hpy99I CGWCG 3 cut(s) 182, 185, 447
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 199, 470
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 174, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 225
HpyF3I CTNAG 4 cut(s) 32, 141, 221, 275
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 2 cut(s) 165, 180
Hsp92II CATG 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 96
Kzo9I GATC 4 cut(s) 53, 78, 349, 378
LmnI GCTCC 2 cut(s) 99, 323
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 193, 199
MalI GATC 4 cut(s) 55, 80, 351, 380
MbiI CCGCTC 1 cut(s) 94
MboI GATC 4 cut(s) 53, 78, 349, 378
MboII GAAGA 1 cut(s) 117
MflI RGATCY 3 cut(s) 53, 78, 349
MluCI AATT 2 cut(s) 258, 412
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 5 cut(s) 52, 162, 230, 284, 343
MroI TCCGGA 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 233
MspI CCGG 7 cut(s) 97, 162, 300, 314, 383, 388, 460
MspR9I CCNGG 3 cut(s) 315, 383, 388
MwoI GCNNNNNNNGC 2 cut(s) 171, 225
NciI CCSGG 3 cut(s) 315, 383, 388
NdeII GATC 4 cut(s) 53, 78, 349, 378
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 2 cut(s) 80, 309
NmuCI GTSAC 2 cut(s) 193, 199
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 433
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 307
PshAI GACNNNNGTC 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 307
PspFI CCCAGC 2 cut(s) 49, 319
PspN4I GGNNCC 2 cut(s) 80, 309
PspPI GGNCC 5 cut(s) 117, 159, 307, 374, 385
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 3 cut(s) 53, 78, 349
RsaI GTAC 3 cut(s) 30, 344, 464
RsaNI GTAC 3 cut(s) 29, 343, 463
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 4 cut(s) 53, 78, 349, 378
Sau96I GGNCC 5 cut(s) 117, 159, 307, 374, 385
ScaI AGTACT 2 cut(s) 30, 344
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 315, 383, 388
SetI ASST 7 cut(s) 44, 105, 183, 234, 276, 309, 402
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 3 cut(s) 117, 159, 307
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 233, 338
SmoI CTYRAG 2 cut(s) 233, 338
Sse9I AATT 2 cut(s) 258, 412
SsiI CCGC 2 cut(s) 92, 311
StyD4I CCNGG 3 cut(s) 313, 381, 386
TaaI ACNGT 2 cut(s) 199, 470
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 108, 451
TaqII GACCGA 2 cut(s) 101, 134
TasI AATT 2 cut(s) 258, 412
TatI WGTACW 2 cut(s) 28, 342
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 229, 256
TseFI GTSAC 2 cut(s) 193, 199
Tsp45I GTSAC 2 cut(s) 193, 199
TspGWI ACGGA 2 cut(s) 144, 431
TspRI CASTG 2 cut(s) 229, 256
Vha464I CTTAAG 1 cut(s) 233
VpaK11BI GGWCC 3 cut(s) 117, 159, 307
XmiI GTMKAC 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 437
ZraI GACGTC 1 cut(s) 181
ZrmI AGTACT 2 cut(s) 30, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.