Rh5BG123000
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0024001
Physical Location & Seq
Forward (+)
11580877 .. 11582231
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG123000.1

Sequence Viewer

Length: 606 bp
ATGGTGACCGGGCGAGAAGTGAGAGTGACTGGTGGGCGTCAATTCTATGTCCGCCACCGCACCACCGGGCGGGGCCCACGCTCGGCCACCGAGTCGGAGCTCCGATCCCTCTACGAGTTCAAGAAAGGGATCCAAATTGACCCGCTCCGGAAAGTCCTCGACACATGGACCGACATCTCACTCAACCAAGCTCAGCCTTGCCCTCCCTGGACCGGCGTTTACTGCAACGACGGCGGCAATGTCGTCGCCGTGGCACTCGACGGCCTCGGCCTCGGCGGCGAGCTTAAGTTGAATACCCTCACTGGCCTCACTGCATTGCAAAACCTCAGTCTCGCCAACAATGACTTCACGGGTCGGGTCCCACCCGCTCTGGGCGCAATGTCCTCTCTCCAGCACTTGGATCTGTCCGCGAACCGGTTCTACGGGCCGATCCCTTCCCGGATTAACGACCTCTCAACTTGTCCCGGAATCTCTTCAAAGGTGGGTTCCCGGGTCCGGCGTCGAATCTCAATCAGCTCAACGTGTTCGATGTGCATTACAATCAGCTGTGGGGGGACATTTCGGATTTGTTGCAGGAGTTTTATAATGTGGAGTATGTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

201

Amino Acids

21.89

Weight (kDa)

9.6

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 32 - 76 1.3e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024001)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25730
malus_domestica MD01G1018100.v1.1
rosa_samantha Rh5BG123000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 397
AccBSI CCGCTC 2 cut(s) 145, 368
AccII CGCG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 8 cut(s) 52, 58, 70, 143, 234, 276, 366, 408
AclWI GGATC 5 cut(s) 99, 124, 137, 408, 424
AcoI YGGCCR 1 cut(s) 84
AcyI GRCGYC 2 cut(s) 37, 499
AfiI CCNNNNNNNGG 7 cut(s) 69, 82, 212, 371, 397, 414, 495
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 414
AgsI TTSAA 3 cut(s) 121, 292, 477
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 5 cut(s) 100, 191, 283, 516, 546
AluI AGCT 5 cut(s) 100, 191, 283, 516, 546
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 5 cut(s) 99, 124, 137, 408, 424
Ama87I CYCGRG 1 cut(s) 489
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 6 cut(s) 73, 84, 262, 268, 304, 425
ApaI GGGCCC 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AsiGI ACCGGT 1 cut(s) 414
Asp700I GAANNNNTTC 2 cut(s) 416, 472
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 7 cut(s) 73, 74, 168, 210, 358, 425, 493
AsuC2I CCSGG 6 cut(s) 10, 67, 439, 465, 490, 491
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 4 cut(s) 168, 210, 358, 493
BaeGI GKGCMC 1 cut(s) 77
BamHI GGATCC 1 cut(s) 129
BanII GRGCYC 2 cut(s) 77, 102
Bbv12I GWGCWC 1 cut(s) 102
BceAI ACGGC 3 cut(s) 233, 247, 277
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 208
BcnI CCSGG 6 cut(s) 10, 67, 439, 465, 490, 491
BcoDI GTCTC 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 284
BglI GCCNNNNNGGC 1 cut(s) 276
BisI GCNGC 2 cut(s) 235, 277
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 236, 278
Bme1390I CCNGG 7 cut(s) 10, 67, 208, 439, 465, 490, 491
Bme18I GGWCC 4 cut(s) 168, 210, 358, 493
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 7 cut(s) 73, 74, 168, 210, 358, 425, 493
BmiI GGNNCC 7 cut(s) 74, 75, 131, 359, 360, 487, 494
BmrFI CCNGG 7 cut(s) 10, 67, 208, 439, 465, 490, 491
BpmI CTGGAG 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 6 cut(s) 10, 67, 439, 465, 490, 491
BsaHI GRCGYC 2 cut(s) 37, 499
BsaJI CCNNGG 5 cut(s) 206, 249, 265, 271, 489
BsaWI WCCGGW 2 cut(s) 147, 414
Bsc4I CCNNNNNNNGG 7 cut(s) 69, 82, 212, 371, 397, 414, 495
Bse118I RCCGGY 2 cut(s) 212, 414
Bse1I ACTGG 2 cut(s) 34, 307
Bse3DI GCAATG 3 cut(s) 244, 314, 384
BseAI TCCGGA 1 cut(s) 147
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 5 cut(s) 206, 249, 265, 271, 489
BseLI CCNNNNNNNGG 7 cut(s) 69, 82, 212, 371, 397, 414, 495
BseMI GCAATG 3 cut(s) 244, 314, 384
BseMII CTCAG 2 cut(s) 206, 340
BseNI ACTGG 2 cut(s) 34, 307
BseSI GKGCMC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 6 cut(s) 75, 86, 264, 270, 306, 427
BshTI ACCGGT 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 9 cut(s) 9, 66, 148, 213, 415, 439, 465, 490, 496
BslFI GGGAC 3 cut(s) 344, 447, 568
BslI CCNNNNNNNGG 7 cut(s) 69, 82, 212, 371, 397, 414, 495
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 3 cut(s) 344, 447, 568
BsnI GGCC 6 cut(s) 75, 86, 264, 270, 306, 427
BsoBI CYCGRG 1 cut(s) 489
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 77, 102
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 4 cut(s) 104, 129, 400, 429
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 8 cut(s) 52, 58, 70, 143, 234, 276, 366, 408
BspANI GGCC 6 cut(s) 75, 86, 264, 270, 306, 427
BspCNI CTCAG 2 cut(s) 205, 339
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 7 cut(s) 74, 75, 131, 359, 360, 487, 494
BspPI GGATC 5 cut(s) 99, 124, 137, 408, 424
BspTI CTTAAG 1 cut(s) 284
BsrBI CCGCTC 2 cut(s) 145, 368
BsrDI GCAATG 3 cut(s) 244, 314, 384
BsrFI RCCGGY 2 cut(s) 212, 414
BsrI ACTGG 2 cut(s) 34, 307
BssAI RCCGGY 2 cut(s) 212, 414
BssECI CCNNGG 5 cut(s) 206, 249, 265, 271, 489
BssMI GATC 4 cut(s) 104, 129, 400, 429
BssNI GRCGYC 2 cut(s) 37, 499
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 478
BstACI GRCGYC 2 cut(s) 37, 499
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 192, 326
BstDSI CCRYGG 1 cut(s) 249
BstEII GGTNACC 1 cut(s) 4
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 4 cut(s) 107, 132, 403, 432
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 104, 129, 400, 429
BstMWI GCNNNNNNNGC 4 cut(s) 222, 231, 276, 374
BstNI CCWGG 1 cut(s) 208
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 7 cut(s) 8, 65, 206, 437, 463, 488, 489
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 129, 400
BstYI RGATCY 2 cut(s) 129, 400
BsuRI GGCC 6 cut(s) 75, 86, 264, 270, 306, 427
BtgI CCRYGG 1 cut(s) 249
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 300, 309
Cac8I GCNNGC 1 cut(s) 281
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 2 cut(s) 212, 414
Cfr13I GGNCC 7 cut(s) 73, 74, 168, 210, 358, 425, 493
Cfr9I CCCGGG 1 cut(s) 489
CseI GACGC 2 cut(s) 26, 488
CspAI ACCGGT 1 cut(s) 414
CviAII CATG 1 cut(s) 165
DdeI CTNAG 2 cut(s) 192, 326
DpnI GATC 4 cut(s) 106, 131, 402, 431
DpnII GATC 4 cut(s) 104, 129, 400, 429
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 77, 102
Eco47I GGWCC 4 cut(s) 168, 210, 358, 493
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 489
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 2 cut(s) 73, 358
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 206
EcoT38I GRGCYC 2 cut(s) 77, 102
FaeI CATG 1 cut(s) 168
FaiI YATR 4 cut(s) 48, 166, 584, 596
FaqI GGGAC 3 cut(s) 344, 447, 568
FatI CATG 1 cut(s) 164
FauI CCCGC 3 cut(s) 63, 150, 373
Fnu4HI GCNGC 2 cut(s) 235, 277
FriOI GRGCYC 2 cut(s) 77, 102
Fsp4HI GCNGC 2 cut(s) 235, 277
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 235, 277
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 6 cut(s) 75, 86, 264, 270, 306, 427
HapII CCGG 9 cut(s) 9, 66, 148, 213, 415, 439, 465, 490, 496
HgaI GACGC 2 cut(s) 26, 488
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 2 cut(s) 37, 499
Hin1II CATG 1 cut(s) 168
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 3 cut(s) 92, 468, 504
HpaII CCGG 9 cut(s) 9, 66, 148, 213, 415, 439, 465, 490, 496
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 97, 104, 564
Hpy188III TCNNGA 2 cut(s) 121, 148
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 4 cut(s) 233, 248, 263, 504
HpyAV CCTTC 1 cut(s) 444
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 5 cut(s) 225, 314, 319, 534, 573
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 231, 276, 374
HpyF3I CTNAG 2 cut(s) 192, 326
HpySE526I ACGT 1 cut(s) 521
Hsp92I GRCGYC 2 cut(s) 37, 499
Hsp92II CATG 1 cut(s) 168
HspAI GCGC 1 cut(s) 375
KflI GGGWCCC 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 147
Kzo9I GATC 4 cut(s) 104, 129, 400, 429
LmnI GCTCC 3 cut(s) 97, 105, 150
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 4, 25
MalI GATC 4 cut(s) 106, 131, 402, 431
MbiI CCGCTC 2 cut(s) 145, 368
MboI GATC 4 cut(s) 104, 129, 400, 429
MboII GAAGA 1 cut(s) 465
MflI RGATCY 2 cut(s) 129, 400
MhlI GDGCHC 2 cut(s) 77, 102
MluCI AATT 2 cut(s) 41, 135
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 75
MroI TCCGGA 1 cut(s) 147
MroXI GAANNNNTTC 2 cut(s) 416, 472
MseI TTAA 2 cut(s) 285, 444
MspA1I CMGCKG 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 9 cut(s) 9, 66, 148, 213, 415, 439, 465, 490, 496
MspR9I CCNGG 7 cut(s) 10, 67, 208, 439, 465, 490, 491
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 4 cut(s) 222, 231, 276, 374
NciI CCSGG 6 cut(s) 10, 67, 439, 465, 490, 491
NdeII GATC 4 cut(s) 104, 129, 400, 429
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 7 cut(s) 74, 75, 131, 359, 360, 487, 494
NmeAIII GCCGAG 3 cut(s) 62, 246, 252
NmuCI GTSAC 2 cut(s) 4, 25
PdmI GAANNNNTTC 2 cut(s) 416, 472
PfeI GAWTC 2 cut(s) 468, 504
PflMI CCANNNNNTGG 1 cut(s) 397
PfoI TCCNGGA 2 cut(s) 437, 463
PinAI ACCGGT 1 cut(s) 414
PkrI GCNGC 2 cut(s) 236, 278
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 358
PsiI TTATAA 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 206
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 7 cut(s) 74, 75, 131, 359, 360, 487, 494
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 7 cut(s) 73, 74, 168, 210, 358, 425, 493
PspPPI RGGWCCY 1 cut(s) 358
PsrI GAACNNNNNNTAC 2 cut(s) 404, 436
PsuI RGATCY 2 cut(s) 129, 400
PvuII CAGCTG 1 cut(s) 546
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 285, 444
SatI GCNGC 2 cut(s) 235, 277
Sau3AI GATC 4 cut(s) 104, 129, 400, 429
Sau96I GGNCC 7 cut(s) 73, 74, 168, 210, 358, 425, 493
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 7 cut(s) 10, 67, 208, 439, 465, 490, 491
SduI GDGCHC 2 cut(s) 77, 102
SetI ASST 9 cut(s) 102, 193, 285, 327, 453, 483, 518, 524, 548
SinI GGWCC 4 cut(s) 168, 210, 358, 493
SmaI CCCGGG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 41, 135
SsiI CCGC 8 cut(s) 52, 58, 70, 143, 234, 276, 366, 408
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 7 cut(s) 8, 65, 206, 437, 463, 488, 489
TaiI ACGT 1 cut(s) 524
TaqI TCGA 4 cut(s) 159, 258, 502, 527
TaqII GACCGA 1 cut(s) 185
TasI AATT 2 cut(s) 41, 135
TauI GCSGC 2 cut(s) 237, 279
TfiI GAWTC 2 cut(s) 468, 504
Tru1I TTAA 2 cut(s) 285, 444
Tru9I TTAA 2 cut(s) 285, 444
TscAI CASTG 2 cut(s) 307, 316
TseFI GTSAC 2 cut(s) 4, 25
Tsp45I GTSAC 2 cut(s) 4, 25
TspMI CCCGGG 1 cut(s) 489
TspRI CASTG 2 cut(s) 307, 316
Van91I CCANNNNNTGG 1 cut(s) 397
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 4 cut(s) 168, 210, 358, 493
XmaI CCCGGG 1 cut(s) 489
XmnI GAANNNNTTC 2 cut(s) 416, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.