ribosomal small subunit assembly
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61111 |
| fragaria_vesca | FvH4_1g27030 |
| pyrus_communis | pycom16g10850 |
| rosa_samantha | Rh4AG290200 Rh4BG295900 Rh4CG305600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 73, 178 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 177 |
| AjnI | CCWGG | 1 cut(s) | 186 |
| AluBI | AGCT | 1 cut(s) | 67 |
| AluI | AGCT | 1 cut(s) | 67 |
| BciT130I | CCWGG | 1 cut(s) | 188 |
| BfmI | CTRYAG | 1 cut(s) | 109 |
| BisI | GCNGC | 1 cut(s) | 74 |
| BlsI | GCNGC | 1 cut(s) | 75 |
| Bme1390I | CCNGG | 1 cut(s) | 188 |
| BmrFI | CCNGG | 1 cut(s) | 188 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 175 |
| BpmI | CTGGAG | 1 cut(s) | 68 |
| BpuEI | CTTGAG | 1 cut(s) | 53 |
| Bsa29I | ATCGAT | 1 cut(s) | 21 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 177 |
| Bse1I | ACTGG | 2 cut(s) | 38, 179 |
| BseBI | CCWGG | 1 cut(s) | 188 |
| BseCI | ATCGAT | 1 cut(s) | 21 |
| BseGI | GGATG | 1 cut(s) | 31 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 177 |
| BseNI | ACTGG | 2 cut(s) | 38, 179 |
| BshVI | ATCGAT | 1 cut(s) | 21 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 177 |
| Bsp143I | GATC | 1 cut(s) | 43 |
| BspACI | CCGC | 2 cut(s) | 73, 178 |
| BspDI | ATCGAT | 1 cut(s) | 21 |
| BspHI | TCATGA | 1 cut(s) | 102 |
| BsrI | ACTGG | 2 cut(s) | 38, 179 |
| BssMI | GATC | 1 cut(s) | 43 |
| Bst2UI | CCWGG | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 3 cut(s) | 113, 134, 158 |
| Bst6I | CTCTTC | 1 cut(s) | 47 |
| BstC8I | GCNNGC | 3 cut(s) | 168, 180, 184 |
| BstF5I | GGATG | 1 cut(s) | 31 |
| BstKTI | GATC | 1 cut(s) | 46 |
| BstMBI | GATC | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 73, 188 |
| BstNI | CCWGG | 1 cut(s) | 188 |
| BstSCI | CCNGG | 1 cut(s) | 186 |
| BstSFI | CTRYAG | 1 cut(s) | 109 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 174 |
| Bsu15I | ATCGAT | 1 cut(s) | 21 |
| BsuTUI | ATCGAT | 1 cut(s) | 21 |
| BtsCI | GGATG | 1 cut(s) | 31 |
| BtsIMutI | CAGTG | 3 cut(s) | 118, 163, 193 |
| Cac8I | GCNNGC | 3 cut(s) | 168, 180, 184 |
| CciI | TCATGA | 1 cut(s) | 102 |
| ClaI | ATCGAT | 1 cut(s) | 21 |
| CviAII | CATG | 1 cut(s) | 103 |
| CviJI | RGCY | 5 cut(s) | 67, 76, 170, 186, 191 |
| CviKI_1 | RGCY | 5 cut(s) | 67, 76, 170, 186, 191 |
| DpnI | GATC | 1 cut(s) | 45 |
| DpnII | GATC | 1 cut(s) | 43 |
| Eam1104I | CTCTTC | 1 cut(s) | 47 |
| EarI | CTCTTC | 1 cut(s) | 47 |
| Eco32I | GATATC | 1 cut(s) | 19 |
| EcoRII | CCWGG | 1 cut(s) | 186 |
| EcoRV | GATATC | 1 cut(s) | 19 |
| FaeI | CATG | 1 cut(s) | 106 |
| FaiI | YATR | 1 cut(s) | 104 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 62, 94 |
| FatI | CATG | 1 cut(s) | 102 |
| FauI | CCCGC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 1 cut(s) | 74 |
| FokI | GGATG | 1 cut(s) | 18 |
| Fsp4HI | GCNGC | 1 cut(s) | 74 |
| GluI | GCNGC | 1 cut(s) | 74 |
| GsuI | CTGGAG | 1 cut(s) | 68 |
| Hin1II | CATG | 1 cut(s) | 106 |
| HincII | GTYRAC | 1 cut(s) | 84 |
| HindII | GTYRAC | 1 cut(s) | 84 |
| Hpy166II | GTNNAC | 1 cut(s) | 84 |
| Hpy188I | TCNGA | 1 cut(s) | 12 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 103 |
| Hpy8I | GTNNAC | 1 cut(s) | 84 |
| HpyCH4III | ACNGT | 3 cut(s) | 113, 134, 158 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 73, 188 |
| Hsp92II | CATG | 1 cut(s) | 106 |
| Kzo9I | GATC | 1 cut(s) | 43 |
| LpnPI | CCDG | 6 cut(s) | 32, 51, 160, 165, 173, 180 |
| MaeIII | GTNAC | 1 cut(s) | 120 |
| MalI | GATC | 1 cut(s) | 45 |
| MboI | GATC | 1 cut(s) | 43 |
| MboII | GAAGA | 2 cut(s) | 64, 91 |
| MluCI | AATT | 1 cut(s) | 91 |
| MnlI | CCTC | 1 cut(s) | 48 |
| MspR9I | CCNGG | 1 cut(s) | 188 |
| MvaI | CCWGG | 1 cut(s) | 188 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 73, 188 |
| NdeII | GATC | 1 cut(s) | 43 |
| NlaIII | CATG | 1 cut(s) | 106 |
| NmuCI | GTSAC | 1 cut(s) | 120 |
| PagI | TCATGA | 1 cut(s) | 102 |
| PkrI | GCNGC | 1 cut(s) | 75 |
| Psp6I | CCWGG | 1 cut(s) | 186 |
| PspGI | CCWGG | 1 cut(s) | 186 |
| SatI | GCNGC | 1 cut(s) | 74 |
| Sau3AI | GATC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 1 cut(s) | 188 |
| SetI | ASST | 1 cut(s) | 69 |
| SfcI | CTRYAG | 1 cut(s) | 109 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 1 cut(s) | 91 |
| SsiI | CCGC | 2 cut(s) | 73, 178 |
| StyD4I | CCNGG | 1 cut(s) | 186 |
| TaaI | ACNGT | 3 cut(s) | 113, 134, 158 |
| TaqI | TCGA | 1 cut(s) | 21 |
| TasI | AATT | 1 cut(s) | 91 |
| TauI | GCSGC | 1 cut(s) | 76 |
| TscAI | CASTG | 2 cut(s) | 118, 163 |
| TseFI | GTSAC | 1 cut(s) | 120 |
| Tsp45I | GTSAC | 1 cut(s) | 120 |
| TspDTI | ATGAA | 3 cut(s) | 20, 91, 119 |
| TspRI | CASTG | 2 cut(s) | 118, 163 |