Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016152

Physical Location & Seq

Genomic Coordinates Forward (+)

2895923 .. 2896591

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCTCAATAGGGCAGACCATCCTGATGGCACTCACTGTTACTGTGAACAAGTTTGCTTCTTCTAATGTGCAGGCAGTTCAGAGAAAACAAAGGAAAGGCACAAAGAAAACCACTCCCTCCGGCGCCACCACTGATTTTGGAAGACGAGGGCTGCTCTTATCTGCTGCTGTTGCTACTCCCCAACTTAGTGACTCTGCGACTGAGCTTCTCAAAAAGTATCTGAAGAGGTCAGAAGACAACAAGGCCAAGAATGACAAGCAGAGAATGGACGATTATTACAAGCGAAATTACAAGGACTATTTTCAGTTTGAGGAAGGACCTTTGAGGTCGAAGAAAACACCGCTTACAGAAGCAGAGAAGGGTATTCTTGATTGGCTTGACAGCAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsaN

Protein Analysis

132

Amino Acids

14.8

Weight (kDa)

9.84

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49975
fragaria_vesca	FvH4_2g03581
malus_domestica	MD10G1108300.v1.1
prunus_persica	Prupe.8G147200_v2.0.a1
pyrus_communis	pycom10g09350
rosa_chinensis	RchiOBHm_Chr6g0252541
rosa_laevigata	RLG00000015090
rosa_multiflora	Rmu_sc0002016.1_g000027
rosa_roxburghii	Rroxscaffold_7G00212630
rosa_rugosa	Rorug05G0536700
rosa_samantha	Rh6AG053000 Rh6BG046900 Rh6CG045500 Rh6DG041300
rosa_wichuraiana	Rw6G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	126
AluBI	AGCT	2 cut(s)	6, 208
AluI	AGCT	2 cut(s)	6, 208
Alw21I	GWGCWC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	154, 167
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	151, 243
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	141, 154
BccI	CCATC	2 cut(s)	22, 29
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	2 cut(s)	155, 168
BlsI	GCNGC	2 cut(s)	156, 169
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	151, 243
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BsaHI	GRCGYC	1 cut(s)	126
BseGI	GGATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	141, 154
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	123
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	125
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	40, 46
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	188, 204
BstF5I	GGATG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	141, 154
BstV2I	GAAGAC	2 cut(s)	151, 243
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	36, 132
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	320
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviJI	RGCY	5 cut(s)	6, 154, 208, 248, 379
CviKI_1	RGCY	5 cut(s)	6, 154, 208, 248, 379
DdeI	CTNAG	2 cut(s)	188, 204
DinI	GGCGCC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	155, 168
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	155, 168
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	2 cut(s)	155, 168
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	84, 225, 235
Hpy188III	TCNNGA	2 cut(s)	25, 371
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	311, 355
HpyCH4III	ACNGT	2 cut(s)	40, 46
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	188, 204
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
LpnPI	CCDG	3 cut(s)	38, 59, 136
Lsp1109I	GCAGC	2 cut(s)	141, 154
MaeIII	GTNAC	2 cut(s)	40, 191
MboII	GAAGA	5 cut(s)	54, 156, 238, 248, 346
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	289
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	5 cut(s)	130, 143, 222, 307, 321
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	173
NarI	GGCGCC	1 cut(s)	126
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	156, 169
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	188
PpuMI	RGGWCCY	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	320
PspPPI	RGGWCCY	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	155, 168
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	8, 210, 233, 325, 332
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	344
SspDI	GGCGCC	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	40, 46
TaqI	TCGA	1 cut(s)	332
TasI	AATT	1 cut(s)	289
TscAI	CASTG	2 cut(s)	43, 139
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	154, 167
Tsp45I	GTSAC	1 cut(s)	191
TspRI	CASTG	2 cut(s)	43, 139
VpaK11BI	GGWCC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.