pycom10g09350

Photosystem I reaction centre subunit N (PSAN or PSI-N)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
12354771 .. 12355716
946 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g09350.3

Sequence Viewer

Length: 399 bp
ATGAGCTCAATAGGCCAGAGCATTTTGATGGCACTGACTGTCACTGTGAACAAGTTTGCTTCATCAAATGTGCAGGCGGTTCACAGAAAGCAGAAAAAAGCACCAAAGAAAAGCACTTCGGCCACAAGCACGAATGATATTGGAAGAAGAGGGCTTCTCTTATCTGCTCTAGTTGCTACTCCTCCACTCAGTGACTCTGGGGCTGAGCTTCTGAAAAGTAAATATCTGAAGAAGTCAGAAGAGAACAAGGCCAAGAATGACAAGGAGAGAATGGACAGTTATTTCAAGCGCAATTACAAGGACTACTTTGAGTTTGAGGAAGGAACTATTAGGGCCAAGAAAGGGGAGCTTACAGAATCAGAGAAGGGTATTCTCGATTGGCTTCAAAATAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.8

Weight (kDa)

9.72

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49975
fragaria_vesca FvH4_2g03581
malus_domestica MD10G1108300.v1.1
prunus_persica Prupe.8G147200_v2.0.a1
pyrus_communis pycom10g09350
rosa_chinensis RchiOBHm_Chr6g0252541
rosa_laevigata RLG00000015090
rosa_multiflora Rmu_sc0002016.1_g000027
rosa_roxburghii Rroxscaffold_7G00212630
rosa_rugosa Rorug05G0536700
rosa_samantha Rh6AG053000 Rh6BG046900 Rh6CG045500 Rh6DG041300
rosa_wichuraiana Rw6G004750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 248
AdeI CACNNNGTG 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 2 cut(s) 286, 386
AluBI AGCT 3 cut(s) 6, 208, 349
AluI AGCT 3 cut(s) 6, 208, 349
Alw21I GWGCWC 1 cut(s) 8
AoxI GGCC 4 cut(s) 13, 120, 249, 333
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 22
BfaI CTAG 1 cut(s) 170
BlpI GCTNAGC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu1102I GCTNAGC 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 195, 202
BseRI GAGGAG 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 4 cut(s) 15, 122, 251, 335
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 342
BsnI GGCC 4 cut(s) 15, 122, 251, 335
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 1 cut(s) 77
BspANI GGCC 4 cut(s) 15, 122, 251, 335
BspCNI CTCAG 2 cut(s) 196, 201
Bst4CI ACNGT 3 cut(s) 40, 46, 278
Bst6I CTCTTC 2 cut(s) 142, 234
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 188, 204
BstHHI GCGC 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 12, 173
BsuRI GGCC 4 cut(s) 15, 122, 251, 335
BtsIMutI CAGTG 3 cut(s) 32, 42, 196
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 188, 204
DraIII CACNNNGTG 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 142, 234
EarI CTCTTC 2 cut(s) 142, 234
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 333, 365
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 290
HaeIII GGCC 4 cut(s) 15, 122, 251, 335
HhaI GCGC 1 cut(s) 291
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 2 cut(s) 194, 356
Hpy166II GTNNAC 2 cut(s) 49, 82
Hpy188I TCNGA 4 cut(s) 213, 228, 238, 361
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 2 cut(s) 49, 82
HpyAV CCTTC 2 cut(s) 314, 358
HpyCH4III ACNGT 3 cut(s) 40, 46, 278
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 173
HpyF3I CTNAG 2 cut(s) 188, 204
HspAI GCGC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 3 cut(s) 29, 59, 183
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 40, 191
MboII GAAGA 4 cut(s) 156, 159, 241, 251
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 3 cut(s) 143, 192, 310
MslI CAYNNNNRTG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 12, 173
NmuCI GTSAC 2 cut(s) 40, 191
PfeI GAWTC 1 cut(s) 356
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 8, 210, 351
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 1 cut(s) 292
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 3 cut(s) 40, 46, 278
TaqI TCGA 1 cut(s) 375
TasI AATT 1 cut(s) 292
TfiI GAWTC 1 cut(s) 356
TscAI CASTG 3 cut(s) 39, 49, 196
TseFI GTSAC 2 cut(s) 40, 191
Tsp45I GTSAC 2 cut(s) 40, 191
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 3 cut(s) 39, 49, 196
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.