Rorug05G0536700

Photosystem I reaction centre subunit N (PSAN or PSI-N)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016152
Physical Location & Seq
Forward (+)
72530670 .. 72531167
498 bp
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UTR
Exon/CDS
Intron
Rorug05G0536700.1

Sequence Viewer

Length: 348 bp
ATGATGATCAAGAAGCAGCGCGCCCCGATCCCCGGCGCGGTGGCGCGTTACCACACATATGGGGTAGACCCCGACAAGAGATCGTTGCTCTCGCCTCCACAGTCTGGTCGCTGGTCGGTCCAGCGCTTCGACAACCCCCAAGCCTATAAGTACTTTGTCAAGAGATGCCACATCATCATTGGGGACGGCGACGTCAGCACCCTCAGCGAGGTCCAGGTCATCTTGGGGCTTCCGGCCAACAACAACATGGAGAGGCTGGACGTGGTGGAAGAGGAGAGCCACGTCATTAGCTTCAGCATGGCGGGCGACGACCACAGCCTATTCGTAACTGACTGTACTAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsaN

Protein Analysis

115

Amino Acids

12.92

Weight (kDa)

5.74

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49975
fragaria_vesca FvH4_2g03581
malus_domestica MD10G1108300.v1.1
prunus_persica Prupe.8G147200_v2.0.a1
pyrus_communis pycom10g09350
rosa_chinensis RchiOBHm_Chr6g0252541
rosa_laevigata RLG00000015090
rosa_multiflora Rmu_sc0002016.1_g000027
rosa_roxburghii Rroxscaffold_7G00212630
rosa_rugosa Rorug05G0536700
rosa_samantha Rh6AG053000 Rh6BG046900 Rh6CG045500 Rh6DG041300
rosa_wichuraiana Rw6G004750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AatII GACGTC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 104
AccI GTMKAC 1 cut(s) 66
AccII CGCG 3 cut(s) 21, 38, 46
AciI CCGC 2 cut(s) 38, 302
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 152, 337
AfeI AGCGCT 1 cut(s) 125
AfiI CCNNNNNNNGG 4 cut(s) 32, 37, 104, 208
AjiI CACGTC 2 cut(s) 262, 283
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
AlwI GGATC 1 cut(s) 22
Aor51HI AGCGCT 1 cut(s) 125
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 16
AspLEI GCGC 5 cut(s) 21, 23, 38, 46, 126
AspS9I GGNCC 2 cut(s) 118, 211
AsuC2I CCSGG 1 cut(s) 33
AvaII GGWCC 2 cut(s) 118, 211
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 33, 215
Bme18I GGWCC 2 cut(s) 118, 211
BmgBI CACGTC 2 cut(s) 262, 283
BmgT120I GGNCC 2 cut(s) 118, 211
BmrFI CCNGG 2 cut(s) 33, 215
BmsI GCATC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 37, 104, 208
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 31
BseLI CCNNNNNNNGG 4 cut(s) 32, 37, 104, 208
BseMII CTCAG 1 cut(s) 217
BsePI GCGCGC 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 3 cut(s) 21, 38, 46
BshFI GGCC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 33, 233
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 4 cut(s) 32, 37, 104, 208
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 6, 27, 80
BspACI CCGC 2 cut(s) 38, 302
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 216
BspFNI CGCG 3 cut(s) 21, 38, 46
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 31
BssHII GCGCGC 1 cut(s) 19
BssMI GATC 3 cut(s) 6, 27, 80
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 102, 335
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 21, 304
BstDEI CTNAG 1 cut(s) 203
BstENI CCTNNNNNAGG 1 cut(s) 206
BstFNI CGCG 3 cut(s) 21, 38, 46
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 5 cut(s) 21, 23, 38, 46, 126
BstKTI GATC 3 cut(s) 9, 30, 83
BstMBI GATC 3 cut(s) 6, 27, 80
BstMWI GCNNNNNNNGC 3 cut(s) 195, 204, 303
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 31, 213
BstUI CGCG 3 cut(s) 21, 38, 46
BstV1I GCAGC 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 59
BsuRI GGCC 1 cut(s) 236
BtrI CACGTC 2 cut(s) 262, 283
Cac8I GCNNGC 2 cut(s) 21, 304
CfoI GCGC 5 cut(s) 21, 23, 38, 46, 126
Cfr13I GGNCC 2 cut(s) 118, 211
Csp6I GTAC 2 cut(s) 151, 336
CviAII CATG 2 cut(s) 247, 298
CviJI RGCY 7 cut(s) 143, 229, 236, 256, 279, 291, 318
CviKI_1 RGCY 7 cut(s) 143, 229, 236, 256, 279, 291, 318
CviQI GTAC 2 cut(s) 151, 336
DdeI CTNAG 1 cut(s) 203
DpnI GATC 3 cut(s) 8, 29, 82
DpnII GATC 3 cut(s) 6, 27, 80
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 118, 211
Eco47III AGCGCT 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 250, 301
FaiI YATR 5 cut(s) 58, 60, 147, 248, 299
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 246, 297
FauI CCCGC 1 cut(s) 295
FauNDI CATATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 6
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
GlaI GCGC 5 cut(s) 20, 22, 37, 45, 125
GluI GCNGC 1 cut(s) 17
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 1 cut(s) 236
HapII CCGG 2 cut(s) 33, 233
HhaI GCGC 5 cut(s) 21, 23, 38, 46, 126
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 250, 301
Hin6I GCGC 5 cut(s) 19, 21, 36, 44, 124
HinP1I GCGC 5 cut(s) 19, 21, 36, 44, 124
HpaII CCGG 2 cut(s) 33, 233
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 10, 160
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 2 cut(s) 194, 311
HpyCH4III ACNGT 2 cut(s) 102, 335
HpyCH4IV ACGT 3 cut(s) 192, 261, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 204, 303
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 3 cut(s) 192, 261, 282
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 250, 301
HspAI GCGC 5 cut(s) 19, 21, 36, 44, 124
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 3 cut(s) 6, 27, 80
LpnPI CCDG 8 cut(s) 46, 90, 97, 134, 200, 227, 242, 246
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 155
MaeII ACGT 3 cut(s) 192, 261, 282
MaeIII GTNAC 2 cut(s) 47, 325
MalI GATC 3 cut(s) 8, 29, 82
MboI GATC 3 cut(s) 6, 27, 80
MboII GAAGA 1 cut(s) 281
MnlI CCTC 5 cut(s) 105, 202, 212, 246, 265
MseI TTAA 1 cut(s) 346
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 2 cut(s) 33, 233
MspR9I CCNGG 2 cut(s) 33, 215
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 3 cut(s) 21, 38, 46
MwoI GCNNNNNNNGC 3 cut(s) 195, 204, 303
NciI CCSGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 58
NdeII GATC 3 cut(s) 6, 27, 80
NlaIII CATG 2 cut(s) 250, 301
PauI GCGCGC 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspPI GGNCC 2 cut(s) 118, 211
PteI GCGCGC 1 cut(s) 19
RsaI GTAC 2 cut(s) 152, 337
RsaNI GTAC 2 cut(s) 151, 336
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 3 cut(s) 6, 27, 80
Sau96I GGNCC 2 cut(s) 118, 211
ScaI AGTACT 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 33, 215
SetI ASST 6 cut(s) 195, 213, 219, 264, 285, 293
SfaNI GCATC 1 cut(s) 155
SinI GGWCC 2 cut(s) 118, 211
SmiMI CAYNNNNRTG 1 cut(s) 57
SsiI CCGC 2 cut(s) 38, 302
StyD4I CCNGG 2 cut(s) 31, 213
TaaI ACNGT 2 cut(s) 102, 335
TaiI ACGT 3 cut(s) 195, 264, 285
TaqI TCGA 1 cut(s) 129
TaqII GACCGA 1 cut(s) 106
TatI WGTACW 2 cut(s) 150, 335
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 118, 211
XagI CCTNNNNNAGG 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 2 cut(s) 176, 244
XmiI GTMKAC 1 cut(s) 66
ZraI GACGTC 1 cut(s) 193
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.