Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0020289

Physical Location & Seq

Genomic Coordinates Reverse (-)

6034441 .. 6035263

Gene Structure 823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTTTCATTACGTTACCTAGAACTAGAAGATCAAACAAGACCTTGTCACAACACTCGTCACAAAAATTTCGAAGAAGAAGTAAACCAGGGGAGGCCTTGTCACAACAATTGCATGGAGGGTCTTGCCGCAAGTCCGCAACAATGTTGAAGATGAAGAAGAATGATAATAAGGGATTGATGGCTCAGGACCTGAGCAAACTGGATCTTACTCGGTTAGATCCACTCTCGCCGGAAGTTATATCCCGTCAGGCCACAATCAACATCGGCACAATTGGTCATGTGGCTCATGGCAAGTCAACGGTGGTCAAGGCAATTTCAGGGGTTCAGACAGATATGCTAATGCCAAAATTTACGAGTGTGATAGCTGCCCCAGTTGGGGTTGGCACAACCTTAGATCCTGCTTTGACTCGCGGCGATAAATTGGTGGGTCAAGTTGTTGGTGATGTTGGCTCACTCCCTGATGTGTATGCACAACTTGAGGTGTACTACCACATGACAAAGGGAAAGGCAGAGAAGAAAGGGGTATCAAAGTTAAGCAAGAATGACATTGTGATGTTAAATATTGGATCCAAGGCAACAGAGGCAAGGGTTGTAGATGTGAGGACTAGTATAGTGAAGTTGCGACTCATCACATCTCCAGTTTGCACCAACATAGGTGACAAAGTGGCCATTAGTCAAAGAGTCGAGAAGCAAAAGCCCTGGTGTCTCATCGCTTGGGGAGAGATTACATCTGGGATACCTCTTGATATCGAACCTTGCCCCTTTAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

259

Amino Acids

27.97

Weight (kDa)

9.92

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF2_C	PF09173	169 - 243	4.4e-18	Initiation factor eIF2 gamma, C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07310
rosa_chinensis	RchiOBHm_Chr6g0259911
rosa_multiflora	Rmu_sc0009049.1_g000015
rosa_samantha	Rh6BG103600 Rh6CG096900 Rh6DG090600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	414
AciI	CCGC	3 cut(s)	130, 138, 414
AclWI	GGATC	5 cut(s)	213, 215, 392, 564, 577
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	2 cut(s)	68, 350
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	378, 379
AgsI	TTSAA	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	608
AjnI	CCWGG	2 cut(s)	88, 701
AluBI	AGCT	2 cut(s)	368, 774
AluI	AGCT	2 cut(s)	368, 774
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	5 cut(s)	213, 215, 392, 564, 577
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	3 cut(s)	96, 252, 669
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	68, 350
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	455, 671
AsuII	TTCGAA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	2 cut(s)	90, 703
BciVI	GTATCC	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	713
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	3 cut(s)	21, 27, 609
BfuI	GTATCC	1 cut(s)	732
BisI	GCNGC	3 cut(s)	130, 369, 415
BlsI	GCNGC	3 cut(s)	131, 370, 416
Bme1390I	CCNGG	2 cut(s)	90, 703
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	2 cut(s)	90, 703
BmrI	ACTGGG	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	2 cut(s)	186, 194
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	89, 573, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 379
Bse1I	ACTGG	3 cut(s)	207, 374, 641
BseBI	CCWGG	2 cut(s)	90, 703
BseDI	CCNNGG	3 cut(s)	89, 573, 701
BseLI	CCNNNNNNNGG	2 cut(s)	378, 379
BseMII	CTCAG	2 cut(s)	185, 200
BseNI	ACTGG	3 cut(s)	207, 374, 641
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	98, 254, 671
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	378, 379
BsmAI	GTCTC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	98, 254, 671
Bsp119I	TTCGAA	1 cut(s)	73
Bsp143I	GATC	5 cut(s)	32, 205, 220, 397, 569
BspACI	CCGC	3 cut(s)	130, 138, 414
BspANI	GGCC	3 cut(s)	98, 254, 671
BspCNI	CTCAG	2 cut(s)	186, 199
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	571
BspPI	GGATC	5 cut(s)	213, 215, 392, 564, 577
BspT104I	TTCGAA	1 cut(s)	73
BsrI	ACTGG	3 cut(s)	207, 374, 641
BssECI	CCNNGG	3 cut(s)	89, 573, 701
BssMI	GATC	5 cut(s)	32, 205, 220, 397, 569
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	2 cut(s)	90, 703
Bst4CI	ACNGT	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	73
BstDEI	CTNAG	3 cut(s)	186, 194, 394
BstFNI	CGCG	1 cut(s)	414
BstKTI	GATC	5 cut(s)	35, 208, 223, 400, 572
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	5 cut(s)	32, 205, 220, 397, 569
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	2 cut(s)	90, 703
BstSCI	CCNGG	2 cut(s)	88, 701
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	4 cut(s)	205, 220, 397, 569
BstYI	RGATCY	4 cut(s)	205, 220, 397, 569
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	98, 254, 671
BtgZI	GCGATG	1 cut(s)	697
CaiI	CAGNNNCTG	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	4 cut(s)	116, 281, 290, 496
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	3 cut(s)	186, 194, 394
DpnI	GATC	5 cut(s)	34, 207, 222, 399, 571
DpnII	GATC	5 cut(s)	32, 205, 220, 397, 569
EaeI	YGGCCR	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	573
Eco147I	AGGCCT	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	88, 701
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	4 cut(s)	119, 284, 293, 499
FaiI	YATR	9 cut(s)	117, 242, 282, 291, 338, 471, 497, 614, 656
FatI	CATG	4 cut(s)	115, 280, 289, 495
Fnu4HI	GCNGC	3 cut(s)	130, 369, 415
Fsp4HI	GCNGC	3 cut(s)	130, 369, 415
FspBI	CTAG	3 cut(s)	21, 27, 609
GluI	GCNGC	3 cut(s)	130, 369, 415
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	98, 254, 671
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	4 cut(s)	119, 284, 293, 499
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	409, 627, 684
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	455, 671
Hpy166II	GTNNAC	3 cut(s)	86, 300, 487
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	188, 688, 746
Hpy8I	GTNNAC	3 cut(s)	86, 300, 487
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	115, 473, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	3 cut(s)	186, 194, 394
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	119, 284, 293, 499
Kzo9I	GATC	5 cut(s)	32, 205, 220, 397, 569
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	3 cut(s)	21, 27, 609
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	5 cut(s)	15, 48, 60, 102, 659
MalI	GATC	5 cut(s)	34, 207, 222, 399, 571
MboI	GATC	5 cut(s)	32, 205, 220, 397, 569
MboII	GAAGA	7 cut(s)	42, 87, 90, 163, 169, 172, 529
MfeI	CAATTG	2 cut(s)	110, 273
MflI	RGATCY	4 cut(s)	205, 220, 397, 569
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	6 cut(s)	68, 110, 273, 315, 350, 422
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	3 cut(s)	403, 621, 693
MnlI	CCTC	6 cut(s)	88, 113, 475, 577, 597, 753
Mox20I	TGGCCA	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	2 cut(s)	536, 560
MslI	CAYNNNNRTG	1 cut(s)	554
Msp20I	TGGCCA	1 cut(s)	671
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	90, 703
MunI	CAATTG	2 cut(s)	110, 273
MvaI	CCWGG	2 cut(s)	90, 703
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeII	GATC	5 cut(s)	32, 205, 220, 397, 569
NlaIII	CATG	4 cut(s)	119, 284, 293, 499
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	4 cut(s)	48, 60, 102, 659
NspV	TTCGAA	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	131, 370, 416
PleI	GAGTC	3 cut(s)	403, 621, 692
PpsI	GAGTC	3 cut(s)	403, 621, 692
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	88, 701
PspGI	CCWGG	2 cut(s)	88, 701
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	190
PspPPI	RGGWCCY	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	4 cut(s)	205, 220, 397, 569
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	536, 560
SatI	GCNGC	3 cut(s)	130, 369, 415
Sau3AI	GATC	5 cut(s)	32, 205, 220, 397, 569
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	3 cut(s)	403, 621, 693
ScrFI	CCNGG	2 cut(s)	90, 703
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	6 cut(s)	68, 110, 273, 315, 350, 422
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	3 cut(s)	130, 138, 414
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	3 cut(s)	21, 27, 609
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	88, 701
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	73, 687, 753
TasI	AATT	6 cut(s)	68, 110, 273, 315, 350, 422
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	2 cut(s)	132, 417
Tru1I	TTAA	2 cut(s)	536, 560
Tru9I	TTAA	2 cut(s)	536, 560
TseFI	GTSAC	4 cut(s)	48, 60, 102, 659
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	4 cut(s)	48, 60, 102, 659
TspDTI	ATGAA	1 cut(s)	170
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	2 cut(s)	68, 350
XspI	CTAG	3 cut(s)	21, 27, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.