Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009049.1

Orthogroup ID

OG0020289

Physical Location & Seq

Genomic Coordinates Reverse (-)

66683 .. 67015

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009049.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgaccaggggattagcagagaagaaagaggcatcaaagttaagcaggaatgacattgtgatgttaaatattggatccaaggccacagaagcaaaggttgttgctgtgagggataaagtggcgatcagtcaaagagtcgagcagcataagccccggtgtcttatcgcttggggcgagattacagctgggaggactcatgatatcgaaccttgccctactttagcagctgactccacaaatcagcaaggagaaggaaacaagaaactgcagagaggtcaaggcagagacttattaggaacagttttggttgatttttatatccatgttatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

9.3

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07310
rosa_chinensis	RchiOBHm_Chr6g0259911
rosa_multiflora	Rmu_sc0009049.1_g000015
rosa_samantha	Rh6BG103600 Rh6CG096900 Rh6DG090600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	69, 82
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	185, 227
AluI	AGCT	2 cut(s)	185, 227
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	69, 82
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	142, 224
AsuC2I	CCSGG	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	154, 236
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	143, 225
BlsI	GCNGC	2 cut(s)	144, 226
Bme1390I	CCNGG	2 cut(s)	7, 154
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	7, 154
BmsI	GCATC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	6, 78, 152
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	3 cut(s)	6, 78, 152
BseXI	GCAGC	2 cut(s)	154, 236
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	74, 123
BspANI	GGCC	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	2 cut(s)	69, 82
BssECI	CCNNGG	3 cut(s)	6, 78, 152
BssMI	GATC	2 cut(s)	74, 123
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	301
BstKTI	GATC	2 cut(s)	77, 126
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	74, 123
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 148
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 152
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	154, 236
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	83
CciI	TCATGA	1 cut(s)	196
CviAII	CATG	2 cut(s)	197, 323
CviJI	RGCY	4 cut(s)	83, 151, 185, 227
CviKI_1	RGCY	4 cut(s)	83, 151, 185, 227
DpnI	GATC	2 cut(s)	76, 125
DpnII	GATC	2 cut(s)	74, 123
Eco130I	CCWWGG	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	5
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	200, 326
FaiI	YATR	4 cut(s)	147, 198, 318, 324
FatI	CATG	2 cut(s)	196, 322
Fnu4HI	GCNGC	2 cut(s)	143, 225
Fsp4HI	GCNGC	2 cut(s)	143, 225
GluI	GCNGC	2 cut(s)	143, 225
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	2 cut(s)	200, 326
HinfI	GANTC	3 cut(s)	135, 193, 230
HpaII	CCGG	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 148
Hsp92II	CATG	2 cut(s)	200, 326
Kzo9I	GATC	2 cut(s)	74, 123
LpnPI	CCDG	4 cut(s)	19, 31, 167, 171
Lsp1109I	GCAGC	2 cut(s)	154, 236
LweI	GCATC	1 cut(s)	41
MalI	GATC	2 cut(s)	76, 125
MboI	GATC	2 cut(s)	74, 123
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	1 cut(s)	74
MlyI	GAGTC	3 cut(s)	144, 187, 224
MnlI	CCTC	4 cut(s)	22, 102, 183, 266
MseI	TTAA	2 cut(s)	41, 65
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	185, 227
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	7, 154
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	89, 148
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	74, 123
NlaIII	CATG	2 cut(s)	200, 326
NlaIV	GGNNCC	1 cut(s)	76
PagI	TCATGA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	144, 226
PleI	GAGTC	3 cut(s)	143, 187, 224
PpsI	GAGTC	3 cut(s)	143, 187, 224
Psp6I	CCWGG	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	74
PvuII	CAGCTG	2 cut(s)	185, 227
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	41, 65
SatI	GCNGC	2 cut(s)	143, 225
Sau3AI	GATC	2 cut(s)	74, 123
SchI	GAGTC	3 cut(s)	144, 187, 224
ScrFI	CCNGG	2 cut(s)	7, 154
SetI	ASST	5 cut(s)	99, 187, 211, 229, 277
SfaNI	GCATC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	59
SspI	AATATT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	5, 152
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	138, 204
Tru1I	TTAA	2 cut(s)	41, 65
Tru9I	TTAA	2 cut(s)	41, 65
TseI	GCWGC	2 cut(s)	142, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.