Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0020289

Physical Location & Seq

Genomic Coordinates Reverse (-)

16056638 .. 16056937

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACCAGGGGATCAGCAGAGAAGAAAGGGGTATCAAAGTTAAGCAGGAATGACATTGTGATGTTAAATATTGGATCCAAGGCCACAGAAGCAAAGGTTGTTGCTGTGAGGGATAGTAGGGTGAAGTTGCGACTCATCACCTCTCCAGTTTGCACCAACATAGGTGACAAAGTGGCGATCAGTCAAAGAGTCGAGCAGCATAAGCCCCGGTGTCATATCGCTTGGGGCGAGATTACAGCTGGGAGAACTCTTGATATCGAACCTTGCCCTACTTTAGCAGCTGACTCCACAAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

99

Amino Acids

10.74

Weight (kDa)

9.66

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF2_C	PF09173	4 - 67	8.7e-16	Initiation factor eIF2 gamma, C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07310
rosa_chinensis	RchiOBHm_Chr6g0259911
rosa_multiflora	Rmu_sc0009049.1_g000015
rosa_samantha	Rh6BG103600 Rh6CG096900 Rh6DG090600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	19, 69, 82
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	239, 281
AluI	AGCT	2 cut(s)	239, 281
AlwI	GGATC	3 cut(s)	19, 69, 82
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	196, 278
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	130, 133, 176
BamHI	GGATCC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	208, 290
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	208
BisI	GCNGC	2 cut(s)	197, 279
BlsI	GCNGC	2 cut(s)	198, 280
Bme1390I	CCNGG	2 cut(s)	7, 208
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	7, 208
BpmI	CTGGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	208
BsaJI	CCNNGG	3 cut(s)	6, 78, 206
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	3 cut(s)	6, 78, 206
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	208, 290
BseYI	CCCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	208
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	11, 74, 177
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	3 cut(s)	19, 69, 82
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	6, 78, 206
BssMI	GATC	3 cut(s)	11, 74, 177
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	7
BstKTI	GATC	3 cut(s)	14, 77, 180
BstMBI	GATC	3 cut(s)	11, 74, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 202
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 206
BstV1I	GCAGC	2 cut(s)	208, 290
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	83
CviJI	RGCY	4 cut(s)	83, 205, 239, 281
CviKI_1	RGCY	4 cut(s)	83, 205, 239, 281
DpnI	GATC	3 cut(s)	13, 76, 179
DpnII	GATC	3 cut(s)	11, 74, 177
Eco130I	CCWWGG	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	5
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaiI	YATR	3 cut(s)	161, 201, 216
Fnu4HI	GCNGC	2 cut(s)	197, 279
Fsp4HI	GCNGC	2 cut(s)	197, 279
GluI	GCNGC	2 cut(s)	197, 279
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	208
HinfI	GANTC	3 cut(s)	132, 189, 284
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	3 cut(s)	130, 133, 176
Hpy188III	TCNNGA	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 202
Kzo9I	GATC	3 cut(s)	11, 74, 177
LpnPI	CCDG	5 cut(s)	19, 31, 159, 221, 225
Lsp1109I	GCAGC	2 cut(s)	208, 290
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	3 cut(s)	13, 76, 179
MboI	GATC	3 cut(s)	11, 74, 177
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	1 cut(s)	74
MlyI	GAGTC	3 cut(s)	126, 198, 278
MnlI	CCTC	2 cut(s)	102, 151
MseI	TTAA	2 cut(s)	41, 65
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	239, 281
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	7, 208
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	89, 202
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	3 cut(s)	11, 74, 177
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	198, 280
PleI	GAGTC	3 cut(s)	126, 197, 278
PpsI	GAGTC	3 cut(s)	126, 197, 278
Psp6I	CCWGG	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	74
PvuII	CAGCTG	2 cut(s)	239, 281
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	41, 65
SatI	GCNGC	2 cut(s)	197, 279
Sau3AI	GATC	3 cut(s)	11, 74, 177
SchI	GAGTC	3 cut(s)	126, 198, 278
ScrFI	CCNGG	2 cut(s)	7, 208
SetI	ASST	6 cut(s)	99, 143, 166, 241, 265, 283
SmiMI	CAYNNNNRTG	1 cut(s)	59
SspI	AATATT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	5, 206
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	2 cut(s)	192, 258
Tru1I	TTAA	2 cut(s)	41, 65
Tru9I	TTAA	2 cut(s)	41, 65
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	196, 278
Tsp45I	GTSAC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.