FvH4_2g07530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016749
Physical Location & Seq
Reverse (-)
6316255 .. 6318402
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07530.t3

Sequence Viewer

Length: 243 bp
ATGCTCCAGACCGGAGACATAGTCGAGGAGCTATGTATCGGCACCTCCGTCACAGTAAAGTCGCCGTTCAAGAACGGTAGGAGCGGCGTCCAGAAGATTCTCCACGCTGTCTTCAAGGCCAAGGACACGTCCATCCAGGTCAGAGTCCGCGGCGGCCAGGACGACTTAACGGAGTTGCAGGCTTGTATTGTCCCCGATGACTCCGCCGGGAAAAAGCCACTTGCCTCAGAAATTTCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.5

Weight (kDa)

6.54

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 1 cut(s) 150
AciI CCGC 5 cut(s) 84, 148, 150, 153, 204
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 70, 115
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 2 cut(s) 135, 156
AluBI AGCT 2 cut(s) 31, 239
AluI AGCT 2 cut(s) 31, 239
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 2 cut(s) 117, 154
ApoI RAATTY 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 208
BanI GGYRCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 103
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 137, 158
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 3 cut(s) 85, 151, 154
BlsI GCNGC 3 cut(s) 86, 152, 155
Bme1390I CCNGG 3 cut(s) 137, 158, 208
BmgBI CACGTC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 3 cut(s) 137, 158, 208
BpiI GAAGAC 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 120, 148
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
BseBI CCWGG 2 cut(s) 137, 158
BseDI CCNNGG 2 cut(s) 120, 148
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 119, 156
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 12, 207
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 119, 156
BspACI CCGC 5 cut(s) 84, 148, 150, 153, 204
BspANI GGCC 2 cut(s) 119, 156
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 120, 148
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 137, 158
Bst4CI ACNGT 2 cut(s) 55, 77
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 226
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 9
BstNI CCWGG 2 cut(s) 137, 158
BstSCI CCNGG 3 cut(s) 135, 156, 206
BstUI CGCG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 119, 156
BtgI CCRYGG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 180
Cfr42I CCGCGG 1 cut(s) 151
CseI GACGC 1 cut(s) 76
CviJI RGCY 6 cut(s) 31, 119, 156, 182, 217, 239
CviKI_1 RGCY 6 cut(s) 31, 119, 156, 182, 217, 239
DdeI CTNAG 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 154
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 135, 156
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaiI YATR 2 cut(s) 20, 34
FaqI GGGAC 1 cut(s) 176
Fnu4HI GCNGC 3 cut(s) 85, 151, 154
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 3 cut(s) 85, 151, 154
GluI GCNGC 3 cut(s) 85, 151, 154
HaeIII GGCC 2 cut(s) 119, 156
HapII CCGG 2 cut(s) 12, 207
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
HinfI GANTC 3 cut(s) 97, 144, 200
HpaII CCGG 2 cut(s) 12, 207
Hpy188I TCNGA 2 cut(s) 143, 229
Hpy188III TCNNGA 3 cut(s) 7, 70, 91
HpyCH4III ACNGT 2 cut(s) 55, 77
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 87
KspI CCGCGG 1 cut(s) 151
LmnI GCTCC 3 cut(s) 9, 28, 81
LpnPI CCDG 9 cut(s) 20, 25, 104, 122, 143, 149, 164, 170, 220
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 49
MbiI CCGCTC 1 cut(s) 84
MboII GAAGA 2 cut(s) 103, 106
MluCI AATT 1 cut(s) 231
MlyI GAGTC 2 cut(s) 153, 194
MnlI CCTC 3 cut(s) 19, 55, 235
MseI TTAA 2 cut(s) 167, 241
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 2 cut(s) 12, 207
MspR9I CCNGG 3 cut(s) 137, 158, 208
MvaI CCWGG 2 cut(s) 137, 158
MvnI CGCG 1 cut(s) 150
NciI CCSGG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 97
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 3 cut(s) 86, 152, 155
PleI GAGTC 2 cut(s) 152, 194
PpsI GAGTC 2 cut(s) 152, 194
Psp6I CCWGG 2 cut(s) 135, 156
PspGI CCWGG 2 cut(s) 135, 156
PspN4I GGNNCC 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 20
SacII CCGCGG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 167, 241
SatI GCNGC 3 cut(s) 85, 151, 154
SchI GAGTC 2 cut(s) 153, 194
ScrFI CCNGG 3 cut(s) 137, 158, 208
SetI ASST 5 cut(s) 33, 47, 131, 141, 241
Sfr303I CCGCGG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 151
Sse9I AATT 1 cut(s) 231
SsiI CCGC 5 cut(s) 84, 148, 150, 153, 204
StyD4I CCNGG 3 cut(s) 135, 156, 206
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 55, 77
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 231
TauI GCSGC 3 cut(s) 87, 153, 156
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 2 cut(s) 167, 241
Tru9I TTAA 2 cut(s) 167, 241
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 2 cut(s) 37, 185
Tth111I GACNNNGTC 1 cut(s) 20
XapI RAATTY 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.