FvH4_5g11310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016749
Physical Location & Seq
Reverse (-)
6423104 .. 6424201
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11310.t1

Sequence Viewer

Length: 330 bp
ATGCTCCAGACCGGAGACATAGTCGAGGAGCTACGTATCGGCACCTCCGTCACCGTAAAGTCGTCGTTCAAGAACTGCAGGAGCGGCGTCCAGAAGATTCTCCACGCTTCCTTCAAGGCCAAGGACACGTCCATCCAGGTCAAAGTCCGTCGCGGCCGGGACGACTTCACGGAGTTGCAAGCTTGGGGAAATGAGAAAGTGGAATTTAGTATGGTTGAAATGTCGAGGATCGCTAAGTGGAAGCTTGAGAAGACAAAAGTGAAAGTCATTTTCAGGCTACAATTCAATGCTACACATAAATTTCAGCTTAAATTTCCCTTGGGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.59

Weight (kDa)

10.12

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 84, 153
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 4 cut(s) 203, 299, 311, 324
AcyI GRCGYC 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 4 cut(s) 70, 115, 218, 286
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 4 cut(s) 31, 182, 244, 307
AluI AGCT 4 cut(s) 31, 182, 244, 307
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 236
AoxI GGCC 2 cut(s) 117, 154
ApoI RAATTY 4 cut(s) 203, 299, 311, 324
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 257
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 2 cut(s) 85, 154
BlsI GCNGC 2 cut(s) 86, 155
Bme1390I CCNGG 2 cut(s) 137, 158
BmgBI CACGTC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 137, 158
BpiI GAAGAC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 120, 318
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 120, 318
BseGI GGATG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 41
BseX3I CGGCCG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 119, 156
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 12, 157
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 119, 156
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 2 cut(s) 84, 153
BspANI GGCC 2 cut(s) 119, 156
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 120, 318
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 120, 318
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 228
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 135, 156
BstSFI CTRYAG 1 cut(s) 76
BstSNI TACGTA 1 cut(s) 35
BstUI CGCG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 257
BstZI CGGCCG 1 cut(s) 154
BsuRI GGCC 2 cut(s) 119, 156
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 180
CseI GACGC 1 cut(s) 76
CviJI RGCY 7 cut(s) 31, 119, 156, 182, 244, 277, 307
CviKI_1 RGCY 7 cut(s) 31, 119, 156, 182, 244, 277, 307
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 154
EagI CGGCCG 1 cut(s) 154
EclXI CGGCCG 1 cut(s) 154
Eco105I TACGTA 1 cut(s) 35
Eco130I CCWWGG 2 cut(s) 120, 318
Eco52I CGGCCG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 120, 318
ErhI CCWWGG 2 cut(s) 120, 318
FaiI YATR 3 cut(s) 20, 212, 297
FaqI GGGAC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 85, 154
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 85, 154
GluI GCNGC 2 cut(s) 85, 154
HaeIII GGCC 2 cut(s) 119, 156
HapII CCGG 2 cut(s) 12, 157
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
HindIII AAGCTT 2 cut(s) 180, 242
HinfI GANTC 1 cut(s) 97
HpaII CCGG 2 cut(s) 12, 157
HphI GGTGA 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 7, 70, 91
Hpy99I CGWCG 2 cut(s) 67, 153
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 34, 128
HpyCH4V TGCA 2 cut(s) 78, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 2 cut(s) 34, 128
Hsp92I GRCGYC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 3 cut(s) 9, 28, 81
LpnPI CCDG 8 cut(s) 20, 25, 64, 104, 122, 149, 170, 259
MaeII ACGT 2 cut(s) 34, 128
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 230
MbiI CCGCTC 1 cut(s) 84
MboI GATC 1 cut(s) 228
MboII GAAGA 2 cut(s) 106, 262
MluCI AATT 5 cut(s) 203, 281, 299, 311, 324
MnlI CCTC 3 cut(s) 19, 55, 219
MseI TTAA 1 cut(s) 309
MspI CCGG 2 cut(s) 12, 157
MspR9I CCNGG 2 cut(s) 137, 158
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 97
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 86, 155
Ppu21I YACGTR 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 85, 154
Sau3AI GATC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 137, 158
SetI ASST 8 cut(s) 33, 37, 47, 131, 141, 184, 246, 309
SfcI CTRYAG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 35
Sse9I AATT 5 cut(s) 203, 281, 299, 311, 324
SsiI CCGC 2 cut(s) 84, 153
StyD4I CCNGG 2 cut(s) 135, 156
StyI CCWWGG 2 cut(s) 120, 318
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 2 cut(s) 37, 131
TaqI TCGA 2 cut(s) 24, 224
TasI AATT 5 cut(s) 203, 281, 299, 311, 324
TauI GCSGC 2 cut(s) 87, 156
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 3 cut(s) 37, 137, 185
Tth111I GACNNNGTC 1 cut(s) 20
XapI RAATTY 4 cut(s) 203, 299, 311, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.