FvH4_2g15321

Belongs to the RuvB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0022163
Physical Location & Seq
Forward (+)
13509041 .. 13509600
560 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15321.t1

Sequence Viewer

Length: 291 bp
ATGATAAAGATCCTAGCAACCCGTGCACAGGTGGAGGAACTAGTTATCGAGGAGGAGAGTTTGGCTTACCTGGGAGAGATAGGCCAAAAATCATCTTTAAGGCATGCTGTTCAGCTCTTATCACCTGCAAGCATTTTGGCGAAAATGAATGGCAGAGACAACATCTGCAAGGCGGATCTAGAAGAAGTCGATACACTATATCTGGATGCGAAGTCATCAGCAAAGGTTCTCCAAGAGCAGCAGGAAAAATACTTCTCCAAGAGCAGCAGGAAAAATACATTTCGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
TIP49

Protein Analysis

97

Amino Acids

10.83

Weight (kDa)

6.58

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP49_C PF17856 4 - 69 2e-19 TIP49 AAA-lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022163)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15321
pyrus_communis pycom03g10410
rosa_chinensis RchiOBHm_Chr6g0278111
rosa_samantha Rh6CG231100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AciI CCGC 1 cut(s) 173
AclWI GGATC 2 cut(s) 4, 183
AfiI CCNNNNNNNGG 1 cut(s) 28
AhlI ACTAGT 1 cut(s) 40
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 2 cut(s) 4, 183
AoxI GGCC 1 cut(s) 82
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 238, 264
AsuHPI GGTGA 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 250, 276
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 150
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 3 cut(s) 14, 41, 179
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 2 cut(s) 239, 265
BlsI GCNGC 2 cut(s) 240, 266
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 28
BseRI GAGGAG 2 cut(s) 65, 68
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 2 cut(s) 250, 276
BshFI GGCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 9, 175
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 2 cut(s) 4, 183
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 2 cut(s) 9, 175
Bst2UI CCWGG 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 105, 130
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 12, 178
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 9, 175
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 250, 276
BstX2I RGATCY 2 cut(s) 9, 175
BstYI RGATCY 2 cut(s) 9, 175
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 105, 130
CviAII CATG 1 cut(s) 104
CviJI RGCY 3 cut(s) 65, 84, 115
CviKI_1 RGCY 3 cut(s) 65, 84, 115
DpnI GATC 2 cut(s) 11, 177
DpnII GATC 2 cut(s) 9, 175
EciI GGCGGA 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 107
FaiI YATR 2 cut(s) 105, 199
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 239, 265
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 239, 265
FspBI CTAG 3 cut(s) 14, 41, 179
GluI GCNGC 2 cut(s) 239, 265
HaeIII GGCC 1 cut(s) 84
Hin1II CATG 1 cut(s) 107
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 2 cut(s) 179, 203
Hpy8I GTNNAC 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 26, 128, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 2 cut(s) 9, 175
LpnPI CCDG 7 cut(s) 14, 56, 83, 138, 188, 227, 253
Lsp1109I GCAGC 2 cut(s) 250, 276
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 14, 41, 179
MalI GATC 2 cut(s) 11, 177
MboI GATC 2 cut(s) 9, 175
MboII GAAGA 1 cut(s) 194
MflI RGATCY 2 cut(s) 9, 175
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 1 cut(s) 286
MnlI CCTC 3 cut(s) 28, 43, 46
MseI TTAA 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 9, 175
NlaIII CATG 1 cut(s) 107
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PaqCI CACCTGC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 240, 266
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 9, 175
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 2 cut(s) 239, 265
Sau3AI GATC 2 cut(s) 9, 175
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 28
SetI ASST 5 cut(s) 33, 72, 117, 127, 228
SfaNI GCATC 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 40
SphI GCATGC 1 cut(s) 107
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 173
SspMI CTAG 3 cut(s) 14, 41, 179
StyD4I CCNGG 1 cut(s) 69
TaqI TCGA 2 cut(s) 48, 189
TasI AATT 1 cut(s) 286
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseI GCWGC 2 cut(s) 238, 264
TspDTI ATGAA 1 cut(s) 161
VneI GTGCAC 1 cut(s) 24
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 107
XspI CTAG 3 cut(s) 14, 41, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.