RchiOBHm_Chr6g0278111

Belongs to the RuvB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022163
Physical Location & Seq
Forward (+)
40961135 .. 40961750
616 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24950

Sequence Viewer

Length: 420 bp
ATGGCTAGTCCTCACGGAATACCTGTCGACTTGTTGGACCGCTTGGTGATTATCCGAACTCAGACGTATGGTCCTGAAGAGATGATAAAGATTTTAGCAACCCGTGCACAGGTGGAGGAACTAGTTATAGAGGAGGAGAGTTTGGCTTACTTGGGAGAGATAGGCCAAAAATCATCTTTAAGGTCTGGCATGATTGTTGGATTTGTAACTCTTGAGTTCTTTTCCTCTGAAGGATGCTCACAATATTATATTTTCCTCAGGCATGCTGTTCAGCTCTTGTCGCCTGCAAGCATTGTGGCAAAAATGAATGGCAGAGACAACATCTGCAAGGCGGATCTCGAAGAAGTGGATACACTATATCTGGATGCGAACTCTTCAGCAAAGGTTCACCAAGAGCAGCTGGAAAAATACATTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
TIP49

Protein Analysis

139

Amino Acids

15.52

Weight (kDa)

4.81

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP49_C PF17856 86 - 122 7.1e-08 TIP49 AAA-lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022163)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15321
pyrus_communis pycom03g10410
rosa_chinensis RchiOBHm_Chr6g0278111
rosa_samantha Rh6CG231100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AciI CCGC 2 cut(s) 40, 332
AclWI GGATC 1 cut(s) 342
AcuI CTGAAG 3 cut(s) 96, 249, 360
AfiI CCNNNNNNNGG 1 cut(s) 109
AhdI GACNNNNNGTC 1 cut(s) 69
AhlI ACTAGT 1 cut(s) 121
AluBI AGCT 2 cut(s) 274, 400
AluI AGCT 2 cut(s) 274, 400
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 309
Alw44I GTGCAC 1 cut(s) 105
AlwI GGATC 1 cut(s) 342
AoxI GGCC 1 cut(s) 163
ApaLI GTGCAC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 37, 71
AsuHPI GGTGA 2 cut(s) 58, 380
AvaII GGWCC 2 cut(s) 37, 71
AxyI CCTNAGG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 409
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 309
BcuI ACTAGT 1 cut(s) 121
BfaI CTAG 2 cut(s) 6, 122
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 1 cut(s) 398
BlsI GCNGC 1 cut(s) 399
Bme18I GGWCC 2 cut(s) 37, 71
BmeRI GACNNNNNGTC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 37, 71
BmsI GCATC 2 cut(s) 224, 355
BpuEI CTTGAG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse21I CCTNAGG 1 cut(s) 257
BseGI GGATG 2 cut(s) 239, 370
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 74, 271
BseRI GAGGAG 2 cut(s) 146, 149
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 309
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 2 cut(s) 40, 332
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 73, 270
BspPI GGATC 1 cut(s) 342
BssMI GATC 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 72, 379
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 264, 285, 289
BstDEI CTNAG 2 cut(s) 60, 257
BstF5I GGATG 2 cut(s) 239, 370
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 104, 280
BstNSI RCATGY 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 257
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 239, 370
Cac8I GCNNGC 3 cut(s) 264, 285, 289
Cfr13I GGNCC 2 cut(s) 37, 71
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 2 cut(s) 190, 263
CviJI RGCY 5 cut(s) 5, 146, 165, 274, 400
CviKI_1 RGCY 5 cut(s) 5, 146, 165, 274, 400
DdeI CTNAG 2 cut(s) 60, 257
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DriI GACNNNNNGTC 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 72, 379
Eam1105I GACNNNNNGTC 1 cut(s) 69
EarI CTCTTC 2 cut(s) 72, 379
EciI GGCGGA 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 37, 71
Eco57I CTGAAG 3 cut(s) 96, 249, 360
Eco81I CCTNAGG 1 cut(s) 257
FaeI CATG 2 cut(s) 193, 266
FaiI YATR 6 cut(s) 69, 128, 191, 249, 264, 358
FatI CATG 2 cut(s) 189, 262
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 398
FokI GGATG 2 cut(s) 246, 377
Fsp4HI GCNGC 1 cut(s) 398
FspBI CTAG 2 cut(s) 6, 122
GluI GCNGC 1 cut(s) 398
HaeIII GGCC 1 cut(s) 165
Hin1II CATG 2 cut(s) 193, 266
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HphI GGTGA 2 cut(s) 58, 380
Hpy166II GTNNAC 3 cut(s) 28, 107, 388
Hpy188I TCNGA 3 cut(s) 56, 63, 229
Hpy188III TCNNGA 4 cut(s) 74, 212, 338, 362
Hpy8I GTNNAC 3 cut(s) 28, 107, 388
HpyAV CCTTC 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 107, 287, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 280
HpyF3I CTNAG 2 cut(s) 60, 257
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 2 cut(s) 193, 266
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 8 cut(s) 36, 87, 95, 171, 244, 297, 347, 386
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 2 cut(s) 224, 355
MaeI CTAG 2 cut(s) 6, 122
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 3 cut(s) 89, 353, 366
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 109
MmeI TCCRAC 2 cut(s) 15, 178
MnlI CCTC 6 cut(s) 21, 109, 124, 127, 235, 266
MseI TTAA 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 400
MwoI GCNNNNNNNGC 2 cut(s) 104, 280
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 193, 266
NspI RCATGY 1 cut(s) 266
PaeI GCATGC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 399
PspPI GGNCC 2 cut(s) 37, 71
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 400
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 398
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 37, 71
SduI GDGCHC 1 cut(s) 109
SetI ASST 7 cut(s) 25, 68, 114, 185, 276, 387, 402
SfaNI GCATC 2 cut(s) 224, 355
SinI GGWCC 2 cut(s) 37, 71
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 121
SphI GCATGC 1 cut(s) 266
SsiI CCGC 2 cut(s) 40, 332
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 6, 122
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 27, 339
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 30
VneI GTGCAC 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 37, 71
XceI RCATGY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 2 cut(s) 6, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.