pycom03g10410

Belongs to the RuvB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0022163
Physical Location & Seq
Forward (+)
9566312 .. 9568491
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g10410.3

Sequence Viewer

Length: 591 bp
ATGGGTCAAATGATGAAGCCGAGGAAAACAGAAATTACTGACAAGTTGCGACAAGAAATAAATAAGGTTGTTAACCGGTATATTGATGAAGGTGTAGCGGAACTTGTACCTGGAGTTCTGTTCATTGATGAGGTACATATGCTGGATATGGAGTGCTTTTCGTACTTGAACCGTGCTTTGGAGAGCTCGTTATCTCCAATCGTAATATTTGCCACCAATAGAGGAATTTGCAATGTAAGAGGGACTGATATGGCTAGTCCTCATGGAATTCCCGTTGACTTGTTGGACCGGTTGGTGATTATCCGAACACAGACTTACGGTCTTGAAGAGATGATAAAGATCTTAGTAATTCGTGCACAAGTAGAGGAACTGGCTATAGATGACGACAGTTTGGCTTACCTCGGAGAGATAGGACAAAAATCATCTTTAAGGCATGCTGTTCAGCTCTTATCGCCTGCAAGCATTGTGGCAAAAATGAACGGCAGAGACAAAATATGCAAGGCTGACCTAGAGGAGGTGGGTACGCTATATCTGGATGCCAAGTCTTCGGCAAAGGTTCTTCAAGAGCAGCAGGAAAAGTACATTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
TIP49

Protein Analysis

197

Amino Acids

21.97

Weight (kDa)

5.18

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022163)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15321
pyrus_communis pycom03g10410
rosa_chinensis RchiOBHm_Chr6g0278111
rosa_samantha Rh6CG231100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 225, 267
AfaI GTAC 5 cut(s) 108, 135, 164, 523, 581
AfiI CCNNNNNNNGG 2 cut(s) 178, 514
AgeI ACCGGT 2 cut(s) 75, 288
AgsI TTSAA 3 cut(s) 169, 326, 563
AhdI GACNNNNNGTC 1 cut(s) 318
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 186, 445
AluI AGCT 2 cut(s) 186, 445
Alw21I GWGCWC 2 cut(s) 188, 358
Alw26I GTCTC 1 cut(s) 480
Alw44I GTGCAC 1 cut(s) 354
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 2 cut(s) 225, 267
AsiGI ACCGGT 2 cut(s) 75, 288
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 307
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 2 cut(s) 188, 358
BbvI GCAGC 1 cut(s) 580
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 2 cut(s) 255, 509
BfmI CTRYAG 1 cut(s) 375
BglII AGATCT 1 cut(s) 339
BisI GCNGC 1 cut(s) 569
BlsI GCNGC 1 cut(s) 570
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 286
BmeRI GACNNNNNGTC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 20, 400
BsaWI WCCGGW 2 cut(s) 75, 288
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 514
Bse118I RCCGGY 2 cut(s) 75, 288
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 338
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 20, 400
BseGI GGATG 1 cut(s) 541
BseJI GATNNNNATC 1 cut(s) 338
BseLI CCNNNNNNNGG 2 cut(s) 178, 514
BseMI GCAATG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 580
BshTI ACCGGT 2 cut(s) 75, 288
BsiHKAI GWGCWC 2 cut(s) 188, 358
BsiSI CCGG 2 cut(s) 76, 289
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 178, 514
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 188, 358
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 238
BsrFI RCCGGY 2 cut(s) 75, 288
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 2 cut(s) 75, 288
BssECI CCNNGG 2 cut(s) 20, 400
BssMI GATC 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 173, 320, 389
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 435, 456, 460
BstDEI CTNAG 1 cut(s) 343
BstENI CCTNNNNNAGG 1 cut(s) 512
BstF5I GGATG 1 cut(s) 541
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BtsCI GGATG 1 cut(s) 541
Cac8I GCNNGC 3 cut(s) 435, 456, 460
Cfr10I RCCGGY 2 cut(s) 75, 288
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 5 cut(s) 107, 134, 163, 522, 580
CspAI ACCGGT 2 cut(s) 75, 288
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 2 cut(s) 263, 434
CviJI RGCY 7 cut(s) 19, 186, 254, 374, 395, 445, 503
CviKI_1 RGCY 7 cut(s) 19, 186, 254, 374, 395, 445, 503
CviQI GTAC 5 cut(s) 107, 134, 163, 522, 580
DdeI CTNAG 1 cut(s) 343
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
DriI GACNNNNNGTC 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 321
Eam1105I GACNNNNNGTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 2 cut(s) 266, 437
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 262, 433
FauNDI CATATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 569
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 569
FspBI CTAG 2 cut(s) 255, 509
GluI GCNGC 1 cut(s) 569
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 2 cut(s) 76, 289
Hin1II CATG 2 cut(s) 266, 437
HincII GTYRAC 2 cut(s) 73, 277
HindII GTYRAC 2 cut(s) 73, 277
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 76, 289
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 3 cut(s) 73, 277, 356
Hpy188I TCNGA 2 cut(s) 305, 404
Hpy188III TCNNGA 3 cut(s) 323, 533, 563
Hpy8I GTNNAC 3 cut(s) 73, 277, 356
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 3 cut(s) 173, 320, 389
HpyCH4V TGCA 4 cut(s) 231, 356, 458, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 343
Hsp92II CATG 2 cut(s) 266, 437
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 339
LpnPI CCDG 9 cut(s) 89, 96, 123, 128, 302, 356, 468, 518, 557
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 1 cut(s) 526
MaeI CTAG 2 cut(s) 255, 509
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 3 cut(s) 338, 537, 551
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 188, 358
MluCI AATT 4 cut(s) 33, 225, 267, 348
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 9 cut(s) 15, 124, 215, 233, 270, 358, 410, 505, 508
MseI TTAA 2 cut(s) 72, 428
MspI CCGG 2 cut(s) 76, 289
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeI CATATG 1 cut(s) 138
NdeII GATC 1 cut(s) 339
NlaIII CATG 2 cut(s) 266, 437
NmeAIII GCCGAG 1 cut(s) 45
NspI RCATGY 1 cut(s) 437
PaeI GCATGC 1 cut(s) 437
PinAI ACCGGT 2 cut(s) 75, 288
PkrI GCNGC 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 1 cut(s) 286
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 5 cut(s) 108, 135, 164, 523, 581
RsaNI GTAC 5 cut(s) 107, 134, 163, 522, 580
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 72, 428
SatI GCNGC 1 cut(s) 569
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 2 cut(s) 188, 358
SfaNI GCATC 1 cut(s) 526
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 286
SphI GCATGC 1 cut(s) 437
Sse9I AATT 4 cut(s) 33, 225, 267, 348
SsiI CCGC 1 cut(s) 98
SspI AATATT 1 cut(s) 207
SspMI CTAG 2 cut(s) 255, 509
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 173, 320, 389
TasI AATT 4 cut(s) 33, 225, 267, 348
TatI WGTACW 1 cut(s) 579
Tru1I TTAA 2 cut(s) 72, 428
Tru9I TTAA 2 cut(s) 72, 428
TseI GCWGC 1 cut(s) 568
TspDTI ATGAA 4 cut(s) 29, 102, 112, 491
VneI GTGCAC 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 286
XagI CCTNNNNNAGG 1 cut(s) 512
XapI RAATTY 2 cut(s) 225, 267
XceI RCATGY 1 cut(s) 437
XspI CTAG 2 cut(s) 255, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.