FvH4_2g17280

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017986
Physical Location & Seq
Forward (+)
14938144 .. 14938912
769 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17280.t1

Sequence Viewer

Length: 378 bp
ATGTCCCAACCCGCTCCTGAGGTGTCCTACAGTTGTGGGTCTTGTGGATACCCTTTGCATTTGTCATCTGCAAATCGTATTGCCTCTGGTTCTGGGATAGGCTCTGATTATCAGAAATCTGTCAAGAAAGGTTTTATTTCCTTCGATTCGGTTGATCTTAGTCGCTTCACGCAGGTTGATGAGGTAAATTGTTTTCCTGTCTCTTGGGGTCAGCGTTCAAAGACTAAGCTCCTTTGCCGCAAATGTGGAGTTCATATTGGTTATGGATATGGAGACTCATCTGTTCTTTGTGGTTTTGACTCTCCCACCTTGTCTACTTCAGCTTATAGGAAGTTCTCTGTGAAAATTCGAGCTTTACAGCCATCTGAAGAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.54

Weight (kDa)

8.7

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 6 - 122 1.6e-43 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017986)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17280
malus_domestica MD10G1145900.v1.1
prunus_persica Prupe.8G184300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0281781
rosa_laevigata RLG00000012935
rosa_rugosa Rorug06G0143600
rosa_samantha Rh6AG256400 Rh6BG259400 Rh6CG258300 Rh6DG250400
rosa_wichuraiana Rw6G022230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 314
AciI CCGC 2 cut(s) 12, 238
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 303
AgsI TTSAA 1 cut(s) 219
AluBI AGCT 3 cut(s) 229, 323, 353
AluI AGCT 3 cut(s) 229, 323, 353
Alw26I GTCTC 2 cut(s) 205, 267
ApoI RAATTY 1 cut(s) 345
AxyI CCTNAGG 1 cut(s) 18
BccI CCATC 1 cut(s) 370
BciVI GTATCC 1 cut(s) 41
BcoDI GTCTC 2 cut(s) 205, 267
BfmI CTRYAG 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 163
BfuI GTATCC 1 cut(s) 41
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bse21I CCTNAGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 9
BsmAI GTCTC 2 cut(s) 205, 267
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 2 cut(s) 12, 238
BspCNI CTCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 163
BsrBI CCGCTC 1 cut(s) 14
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 3 cut(s) 18, 158, 225
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 205, 267
BstMBI GATC 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 18
BsuI GTATCC 1 cut(s) 41
BveI ACCTGC 1 cut(s) 163
CviJI RGCY 5 cut(s) 102, 229, 323, 353, 361
CviKI_1 RGCY 5 cut(s) 102, 229, 323, 353, 361
DdeI CTNAG 3 cut(s) 18, 158, 225
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 18
FaiI YATR 4 cut(s) 255, 264, 270, 327
FauI CCCGC 1 cut(s) 19
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 238
HinfI GANTC 3 cut(s) 146, 275, 299
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 3 cut(s) 106, 114, 367
Hpy188III TCNNGA 2 cut(s) 17, 124
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 58, 71
HpyF3I CTNAG 3 cut(s) 18, 158, 225
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 19, 234
LpnPI CCDG 5 cut(s) 30, 72, 78, 158, 210
MalI GATC 1 cut(s) 156
MbiI CCGCTC 1 cut(s) 14
MboI GATC 1 cut(s) 154
MluCI AATT 2 cut(s) 187, 345
MlyI GAGTC 2 cut(s) 269, 293
MnlI CCTC 3 cut(s) 13, 94, 175
NdeII GATC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 2 cut(s) 269, 293
PpsI GAGTC 2 cut(s) 269, 293
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 2 cut(s) 269, 293
SetI ASST 8 cut(s) 24, 133, 177, 186, 231, 311, 325, 355
SfcI CTRYAG 1 cut(s) 28
Sse9I AATT 2 cut(s) 187, 345
SsiI CCGC 2 cut(s) 12, 238
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 144, 349
TasI AATT 2 cut(s) 187, 345
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 242
XapI RAATTY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.