MD10G1145900.v1.1

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0017986
Physical Location & Seq
Forward (+)
23242650 .. 23243656
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1145900.v1.1.491

Sequence Viewer

Length: 378 bp
ATGTCCCAAGCTCAAGTCTCCTACAGTTGTGGTTCTTGTGGATACCCTTTGAACTTGTCGTCTTCAAATCGATTGACTGCTGAGTCTGGCATAGGCTCCAACTATAGAAAGTCCATCAAGAAAGGTCTTATTTCATTCCTTACAGTTGATCTTAGTCGGTTCACACAGGTTGATGAGGTAAACTGTTTTCCAGTCTCTTGGGGTCGTTATCGTTCAAAGACTAAACTTCTCTGCCGCAAATGTGGGGTTCATATCGGTTATGGATATGGAGACTCTTCTGTTCTTTGTGGTTTTGACTCTCCCAACTCATCATCTACTTCATCTTATAGAAAGTTCAACATAAAAATACGAGCTCTACAACCTTCGGAACAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.76

Weight (kDa)

9.4

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 2 - 122 2.8e-50 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017986)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17280
malus_domestica MD10G1145900.v1.1
prunus_persica Prupe.8G184300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0281781
rosa_laevigata RLG00000012935
rosa_rugosa Rorug06G0143600
rosa_samantha Rh6AG256400 Rh6BG259400 Rh6CG258300 Rh6DG250400
rosa_wichuraiana Rw6G022230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
AciI CCGC 1 cut(s) 235
AgsI TTSAA 4 cut(s) 52, 66, 216, 337
AluBI AGCT 2 cut(s) 11, 353
AluI AGCT 2 cut(s) 11, 353
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 3 cut(s) 22, 199, 264
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 1 cut(s) 122
BciVI GTATCC 1 cut(s) 35
BcoDI GTCTC 3 cut(s) 22, 199, 264
BfmI CTRYAG 2 cut(s) 22, 103
BfuI GTATCC 1 cut(s) 35
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 70
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 355
BsmAI GTCTC 3 cut(s) 22, 199, 264
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 191
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 4 cut(s) 26, 145, 185, 372
Bst6I CTCTTC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 81, 152
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 3 cut(s) 22, 199, 264
BstMBI GATC 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 22, 103
BstV2I GAAGAC 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 70
BsuI GTATCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 377
ClaI ATCGAT 1 cut(s) 70
CviJI RGCY 3 cut(s) 11, 96, 353
CviKI_1 RGCY 3 cut(s) 11, 96, 353
DdeI CTNAG 2 cut(s) 81, 152
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 355
FaiI YATR 7 cut(s) 92, 105, 252, 261, 267, 327, 341
Fnu4HI GCNGC 1 cut(s) 235
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 235
HinfI GANTC 3 cut(s) 83, 272, 296
Hpy166II GTNNAC 2 cut(s) 162, 181
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 162, 181
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 4 cut(s) 26, 145, 185, 372
HpyF3I CTNAG 2 cut(s) 81, 152
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 72, 152, 204
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 54, 267
MhlI GDGCHC 1 cut(s) 355
MlyI GAGTC 3 cut(s) 92, 266, 290
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 1 cut(s) 169
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 3 cut(s) 91, 266, 290
PpsI GAGTC 3 cut(s) 91, 266, 290
Psp124BI GAGCTC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 97
SacI GAGCTC 1 cut(s) 355
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 3 cut(s) 92, 266, 290
SduI GDGCHC 1 cut(s) 355
SetI ASST 6 cut(s) 13, 127, 171, 180, 355, 364
SfcI CTRYAG 2 cut(s) 22, 103
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SsiI CCGC 1 cut(s) 235
SstI GAGCTC 1 cut(s) 355
TaaI ACNGT 4 cut(s) 26, 145, 185, 372
TaqI TCGA 1 cut(s) 70
TauI GCSGC 1 cut(s) 237
TscAI CASTG 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 123, 239, 309
TspRI CASTG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.