Prupe.8G184300_v2.0.a1

protein At4g08330, chloroplastic-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
18301488 .. 18302272
785 bp
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UTR
Exon/CDS
Intron
Prupe.8G184300.1

Sequence Viewer

Length: 375 bp
ATGTCCCAAGCTGAAGTGTCCTATAGTTGTGGGTCTTGTGCATACCCTCTGAACTTGTCATCTTCAAATCGTTTGACCTCTGGTTCTGGCATTGGCTCTGAGTATCAAAAGTCCGTCAAGAAAGGTTTTATTTCATTCCTCACAGTTGATCTTAGTCGGTTCACGCAGGTTGATGAGGTAAACTGTTTTCCTGTCTCTTGGGGTCGTTATCGTTCAAAGACTAAACTCCTCTGCCGTAAATGTGGGGTTCATATTGGTTATGGTTATGGAGACTCTTCTGCTCTTTGTGGTTTTGACTCTCCCAACTCATCTACTTCAGCTTACAGAAAGTTCACTGTAAAAATACGAGCTCTACAGCCTTCTGAAGAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.57

Weight (kDa)

9.02

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017986)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17280
malus_domestica MD10G1145900.v1.1
prunus_persica Prupe.8G184300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0281781
rosa_laevigata RLG00000012935
rosa_rugosa Rorug06G0143600
rosa_samantha Rh6AG256400 Rh6BG259400 Rh6CG258300 Rh6DG250400
rosa_wichuraiana Rw6G022230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AcuI CTGAAG 2 cut(s) 33, 300
AgsI TTSAA 2 cut(s) 66, 216
AluBI AGCT 3 cut(s) 11, 320, 350
AluI AGCT 3 cut(s) 11, 320, 350
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 2 cut(s) 199, 264
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 199, 264
BfmI CTRYAG 2 cut(s) 22, 353
BfuAI ACCTGC 1 cut(s) 157
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 199, 264
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 157
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 3 cut(s) 145, 185, 337
Bst6I CTCTTC 2 cut(s) 280, 360
BstDEI CTNAG 2 cut(s) 99, 152
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 2 cut(s) 199, 264
BstMBI GATC 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 22, 353
BtsIMutI CAGTG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 157
CviJI RGCY 5 cut(s) 11, 96, 320, 350, 358
CviKI_1 RGCY 5 cut(s) 11, 96, 320, 350, 358
DdeI CTNAG 2 cut(s) 99, 152
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 280, 360
EarI CTCTTC 2 cut(s) 280, 360
Ecl136II GAGCTC 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 350
Eco57I CTGAAG 2 cut(s) 33, 300
EcoICRI GAGCTC 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 352
FaiI YATR 5 cut(s) 24, 43, 252, 261, 267
FriOI GRGCYC 1 cut(s) 352
HinfI GANTC 2 cut(s) 272, 296
Hpy166II GTNNAC 3 cut(s) 162, 181, 333
Hpy188I TCNGA 3 cut(s) 51, 100, 364
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 3 cut(s) 162, 181, 333
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 3 cut(s) 145, 185, 337
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 99, 152
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 66, 72, 152, 204
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 54, 267
MhlI GDGCHC 1 cut(s) 352
MlyI GAGTC 2 cut(s) 266, 290
MnlI CCTC 5 cut(s) 57, 88, 149, 169, 239
NdeII GATC 1 cut(s) 148
PleI GAGTC 2 cut(s) 266, 290
PpsI GAGTC 2 cut(s) 266, 290
Psp124BI GAGCTC 1 cut(s) 352
SacI GAGCTC 1 cut(s) 352
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 2 cut(s) 266, 290
SduI GDGCHC 1 cut(s) 352
SetI ASST 7 cut(s) 13, 80, 127, 171, 180, 322, 352
SfcI CTRYAG 2 cut(s) 22, 353
SstI GAGCTC 1 cut(s) 352
TaaI ACNGT 3 cut(s) 145, 185, 337
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 123, 239
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.