FvH4_2g19840

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017988
Physical Location & Seq
Reverse (-)
16757416 .. 16758739
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19840.t1

Sequence Viewer

Length: 474 bp
ATGTTGCCTGCAAATGCTAACGGTCACATGTCAAACAATGGGAACCCTGCAGAAAACAGTAAAAGTGGGAATGCAGATAGGCCAGTTTTGAGGAATTGGAGAAACAAGCCGACTGTCCTTCTCATTGATGAATCTGAAAACCACAGGGTTCTGGGAACGGCTTATCTTACAGCTTATGGTGCCGAAACTACATCTGTGACTGATGGAAGGGCTGCTTTGGAGCTCACATTTTCTGGTGCTAGGTTCAAGTTGATCCTCATTGACATGCACATGCGCTATATGAGCGGCGCACAGTGTGTGAATCACCTTCGAACCATGGGAGTGAAGTCGTTGATGCTCGGTATGACAATTTTTTGTAGAGAAAGAGAGGAACAGGCATTTCTAGAAGCAGGGGGCAATGGCTTCATTCCAAAGCCTCTTAGTCCTGACAACTTTCTTCAAGTCCTGGAAGCACTCGATAATAACCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

158

Amino Acids

17.25

Weight (kDa)

6.41

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 39 - 149 1.9e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017988)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19840
rosa_chinensis RchiOBHm_Chr6g0285541
rosa_laevigata RLG00000012629
rosa_roxburghii Rroxscaffold_7G00183040
rosa_rugosa Rorug06G0175300 Rorug06G0175300
rosa_samantha Rh6AG286900 Rh6BG288100 Rh6CG289300 Rh6DG282100
rosa_wichuraiana Rw6G024660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 285
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 247
AdeI CACNNNGTG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 2 cut(s) 247, 440
AjnI CCWGG 2 cut(s) 444, 465
AluBI AGCT 2 cut(s) 173, 223
AluI AGCT 2 cut(s) 173, 223
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 276, 290
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 446, 467
BfaI CTAG 2 cut(s) 240, 383
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 213, 286
BlsI GCNGC 2 cut(s) 214, 287
Bme1390I CCNGG 2 cut(s) 446, 467
BmiI GGNNCC 2 cut(s) 44, 181
BmrFI CCNGG 2 cut(s) 446, 467
BmsI GCATC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 315, 466
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 446, 467
BseDI CCNNGG 2 cut(s) 315, 466
BseMI GCAATG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 44, 181
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 315, 466
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 446, 467
Bst4CI ACNGT 4 cut(s) 23, 59, 115, 294
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 419
BstDSI CCRYGG 1 cut(s) 315
BstHHI GCGC 2 cut(s) 276, 290
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 179, 282
BstNI CCWGG 2 cut(s) 446, 467
BstNSI RCATGY 3 cut(s) 31, 268, 274
BstSCI CCNGG 2 cut(s) 444, 465
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 2 cut(s) 276, 290
CviAII CATG 4 cut(s) 28, 265, 271, 316
CviJI RGCY 8 cut(s) 82, 109, 161, 173, 212, 223, 402, 415
CviKI_1 RGCY 8 cut(s) 82, 109, 161, 173, 212, 223, 402, 415
DdeI CTNAG 1 cut(s) 419
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DraIII CACNNNGTG 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 444, 465
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 4 cut(s) 31, 268, 274, 319
FaiI YATR 8 cut(s) 29, 177, 266, 272, 279, 281, 317, 344
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 4 cut(s) 27, 264, 270, 315
Fnu4HI GCNGC 2 cut(s) 213, 286
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 213, 286
FspBI CTAG 2 cut(s) 240, 383
GlaI GCGC 2 cut(s) 275, 289
GluI GCNGC 2 cut(s) 213, 286
HaeIII GGCC 1 cut(s) 82
HhaI GCGC 2 cut(s) 276, 290
Hin1II CATG 4 cut(s) 31, 268, 274, 319
Hin6I GCGC 2 cut(s) 274, 288
HinP1I GCGC 2 cut(s) 274, 288
HinfI GANTC 2 cut(s) 131, 301
HphI GGTGA 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 383, 425
HpyAV CCTTC 3 cut(s) 128, 201, 317
HpyCH4III ACNGT 4 cut(s) 23, 59, 115, 294
HpyCH4V TGCA 4 cut(s) 11, 50, 74, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 282
HpyF3I CTNAG 1 cut(s) 419
Hsp92II CATG 4 cut(s) 31, 268, 274, 319
HspAI GCGC 2 cut(s) 274, 288
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 240, 383
MaeIII GTNAC 2 cut(s) 23, 196
MalI GATC 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 285
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 2 cut(s) 94, 348
MnlI CCTC 4 cut(s) 84, 266, 361, 426
MslI CAYNNNNRTG 3 cut(s) 263, 269, 320
MspR9I CCNGG 2 cut(s) 446, 467
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 2 cut(s) 446, 467
MwoI GCNNNNNNNGC 2 cut(s) 179, 282
NcoI CCATGG 1 cut(s) 315
NdeII GATC 1 cut(s) 252
NlaIII CATG 4 cut(s) 31, 268, 274, 319
NlaIV GGNNCC 2 cut(s) 44, 181
NmuCI GTSAC 2 cut(s) 23, 196
NspI RCATGY 3 cut(s) 31, 268, 274
NspV TTCGAA 1 cut(s) 310
PciI ACATGT 1 cut(s) 27
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 131, 301
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 2 cut(s) 214, 287
PscI ACATGT 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 444, 465
PspGI CCWGG 2 cut(s) 444, 465
PspN4I GGNNCC 2 cut(s) 44, 181
PstI CTGCAG 1 cut(s) 52
RseI CAYNNNNRTG 3 cut(s) 263, 269, 320
SacI GAGCTC 1 cut(s) 225
SatI GCNGC 2 cut(s) 213, 286
Sau3AI GATC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 446, 467
SduI GDGCHC 1 cut(s) 225
SetI ASST 4 cut(s) 175, 225, 245, 309
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 310
SmiMI CAYNNNNRTG 3 cut(s) 263, 269, 320
Sse9I AATT 2 cut(s) 94, 348
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 240, 383
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 444, 465
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 4 cut(s) 23, 59, 115, 294
TaqI TCGA 2 cut(s) 310, 456
TasI AATT 2 cut(s) 94, 348
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 2 cut(s) 131, 301
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 2 cut(s) 23, 196
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 2 cut(s) 23, 196
TspDTI ATGAA 2 cut(s) 144, 394
TspRI CASTG 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 3 cut(s) 31, 268, 274
XspI CTAG 2 cut(s) 240, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.