Rorug06G0175300

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017988
Physical Location & Seq
Reverse (-)
27461021 .. 27464340
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0175300.1

Sequence Viewer

Length: 993 bp
ATGAAGGTAACCAAATCACCATCTCAGAGCTTCGCCAGATCTCGAAGGACCTTAGGATGTCTCAGCGTCACAAGCACGCTCTCGAGCTTGCAGGTATCGGAGTGGATGGTCGCCCATAATGAGTTTGAGTTATTAGATTCAGACTATGCAGTCCGCATTGTCTTGATGACAAAAGTCTTTGGTATTGATGCTGCAGAACGGTACTTTGAAGGTCTACCTCCTACTGCAAAAACTAGTGAGACATATACTGCTCTCCTCCACTGCTATGCTGCAGCAAAATTGACTGAAAAGGCTGAGGATCTCTATGAGGGAATAAAGAATTCGAAGCTGTCCCTTAGTGCCCTTACTTACAATGAGATGATGACTATGTACATGTCAGTGGGACAAGTGGAGAAGGTCCCTTTAGTTGTTGAAGAACTAAAACGGCAGAAGGTTGCCCCAGATATCTTCACTTACAATCTTTGGATAAGTTCATGTGCTGCAATGCTAAAGATAGATCAAGTTAAATGGATATTAGATGAAATGAGATCTGATCCTGGTTTTGCTGAAGGCTGGGAAACATACATTAACCTGGCCAATCTATATATCAATATTGGTCATCTGGTGAATGAAGAATTCAACTCTCTGGTTGAAACTGAGAAAGGAATCACACAAAGCGAATGGATTACGTACGACTTCCTCATTATTCTGCATGCTGGTTTAGGAAACAAAGGTAGAATCGATCAGATATGGAAATCCTTGTTAATGACAAAACAAAAGATGACAAGTAGAAATTATATTTGCATCATTTCCTCATATATAATGCTTGGGCAGCTGAAAGAAGTGGGAGAAGTTGTTGATCAGTGGAAGCTTTCAACCACTGCAGATTTTGTTGTTTCTGCCTGTAGGAGGGTTTGGAATGCATTCAGAGACATTGGGTTGACTGAAAAAGCCCACGACTTCCACGCACTTCTGATTCAGAAGAACTGCGATTCTTCAAATTCGTTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

330

Amino Acids

37.49

Weight (kDa)

5.65

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 105 - 159 7.6e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 115 - 160 1.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017988)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19840
rosa_chinensis RchiOBHm_Chr6g0285541
rosa_laevigata RLG00000012629
rosa_roxburghii Rroxscaffold_7G00183040
rosa_rugosa Rorug06G0175300 Rorug06G0175300
rosa_samantha Rh6AG286900 Rh6BG288100 Rh6CG289300 Rh6DG282100
rosa_wichuraiana Rw6G024660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 214
AciI CCGC 1 cut(s) 154
AclWI GGATC 2 cut(s) 306, 527
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 3 cut(s) 319, 614, 979
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 3 cut(s) 203, 371, 671
AfiI CCNNNNNNNGG 1 cut(s) 888
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 6 cut(s) 209, 413, 619, 632, 855, 978
AhlI ACTAGT 1 cut(s) 233
AjnI CCWGG 2 cut(s) 535, 570
AluBI AGCT 5 cut(s) 30, 87, 328, 814, 850
AluI AGCT 5 cut(s) 30, 87, 328, 814, 850
Alw26I GTCTC 3 cut(s) 65, 233, 903
AlwI GGATC 2 cut(s) 306, 527
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 5 cut(s) 191, 269, 272, 479, 811
ApoI RAATTY 3 cut(s) 319, 614, 979
Asp700I GAANNNNTTC 1 cut(s) 902
AspS9I GGNCC 2 cut(s) 48, 397
AsuHPI GGTGA 2 cut(s) 9, 616
AsuII TTCGAA 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 48, 397
AxyI CCTNAGG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 575
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 5 cut(s) 178, 256, 284, 466, 823
BccI CCATC 2 cut(s) 28, 100
BceAI ACGGC 1 cut(s) 440
BciT130I CCWGG 2 cut(s) 537, 572
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 3 cut(s) 65, 233, 903
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 4 cut(s) 192, 270, 861, 883
BfuAI ACCTGC 1 cut(s) 82
BglII AGATCT 2 cut(s) 38, 527
BisI GCNGC 5 cut(s) 192, 270, 273, 480, 812
BlsI GCNGC 5 cut(s) 193, 271, 274, 481, 813
Bme1390I CCNGG 2 cut(s) 537, 572
Bme18I GGWCC 2 cut(s) 48, 397
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 48, 397
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 2 cut(s) 537, 572
BmsI GCATC 2 cut(s) 178, 792
BoxI GACNNNNGTC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 720
BsaAI YACGTR 1 cut(s) 669
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 1 cut(s) 888
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 2 cut(s) 537, 572
BseCI ATCGAT 1 cut(s) 720
BseGI GGATG 2 cut(s) 62, 111
BseLI CCNNNNNNNGG 1 cut(s) 888
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 4 cut(s) 38, 76, 285, 627
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 5 cut(s) 178, 256, 284, 466, 823
BseYI CCCAGC 1 cut(s) 552
BshFI GGCC 1 cut(s) 575
BshVI ATCGAT 1 cut(s) 720
BsiHKCI CYCGRG 1 cut(s) 82
BsiWI CGTACG 1 cut(s) 669
BslFI GGGAC 3 cut(s) 316, 383, 396
BslI CCNNNNNNNGG 1 cut(s) 888
BsmAI GTCTC 3 cut(s) 65, 233, 903
BsmFI GGGAC 3 cut(s) 316, 383, 396
BsmI GAATGC 2 cut(s) 902, 904
BsnI GGCC 1 cut(s) 575
BsoBI CYCGRG 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 343
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 4 cut(s) 37, 75, 286, 628
BspDI ATCGAT 1 cut(s) 720
BspLI GGNNCC 1 cut(s) 399
BspMAI CTGCAG 3 cut(s) 196, 274, 865
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 2 cut(s) 306, 527
BspT104I TTCGAA 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 489
BsrGI TGTACA 1 cut(s) 369
BssMI GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
Bst2UI CCWGG 2 cut(s) 537, 572
Bst4CI ACNGT 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 669
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 77, 89, 693
BstDEI CTNAG 6 cut(s) 24, 52, 62, 294, 335, 636
BstEII GGTNACC 1 cut(s) 7
BstENI CCTNNNNNAGG 1 cut(s) 886
BstF5I GGATG 2 cut(s) 62, 111
BstKTI GATC 7 cut(s) 41, 301, 499, 530, 535, 724, 841
BstMAI GTCTC 3 cut(s) 65, 233, 903
BstMBI GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
BstMWI GCNNNNNNNGC 2 cut(s) 72, 811
BstNI CCWGG 2 cut(s) 537, 572
BstNSI RCATGY 2 cut(s) 376, 695
BstPAI GACNNNNGTC 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 7
BstSCI CCNGG 2 cut(s) 535, 570
BstSFI CTRYAG 4 cut(s) 192, 270, 861, 883
BstSLI GKGCMC 1 cut(s) 343
BstSNI TACGTA 1 cut(s) 669
BstV1I GCAGC 5 cut(s) 178, 256, 284, 466, 823
BstX2I RGATCY 3 cut(s) 38, 298, 527
BstYI RGATCY 3 cut(s) 38, 298, 527
Bsu15I ATCGAT 1 cut(s) 720
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 575
BsuTUI ATCGAT 1 cut(s) 720
BtsCI GGATG 2 cut(s) 62, 111
BtsI GCAGTG 2 cut(s) 259, 858
BtsIMutI CAGTG 4 cut(s) 259, 384, 848, 858
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 77, 89, 693
Cfr13I GGNCC 2 cut(s) 48, 397
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 1 cut(s) 55
Csp6I GTAC 3 cut(s) 202, 370, 670
CviAII CATG 3 cut(s) 373, 474, 692
CviJI RGCY 9 cut(s) 30, 87, 293, 328, 552, 575, 814, 850, 932
CviKI_1 RGCY 9 cut(s) 30, 87, 293, 328, 552, 575, 814, 850, 932
CviQI GTAC 3 cut(s) 202, 370, 670
DdeI CTNAG 6 cut(s) 24, 52, 62, 294, 335, 636
DpnI GATC 7 cut(s) 40, 300, 498, 529, 534, 723, 840
DpnII GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 573
Eco105I TACGTA 1 cut(s) 669
Eco32I GATATC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 48, 397
Eco57I CTGAAG 1 cut(s) 567
Eco81I CCTNAGG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 82
Eco91I GGTNACC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 886
EcoO109I RGGNCCY 2 cut(s) 48, 397
EcoO65I GGTNACC 1 cut(s) 7
EcoRI GAATTC 2 cut(s) 319, 614
EcoRII CCWGG 2 cut(s) 535, 570
EcoRV GATATC 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 904
FaeI CATG 3 cut(s) 376, 477, 695
FaqI GGGAC 3 cut(s) 316, 383, 396
FatI CATG 3 cut(s) 372, 473, 691
FbaI TGATCA 1 cut(s) 838
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 5 cut(s) 192, 270, 273, 480, 812
FokI GGATG 2 cut(s) 69, 118
Fsp4HI GCNGC 5 cut(s) 192, 270, 273, 480, 812
FspBI CTAG 1 cut(s) 234
GluI GCNGC 5 cut(s) 192, 270, 273, 480, 812
GsaI CCCAGC 1 cut(s) 556
HaeIII GGCC 1 cut(s) 575
HgaI GACGC 1 cut(s) 55
Hin1II CATG 3 cut(s) 376, 477, 695
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 5 cut(s) 137, 645, 717, 955, 971
HphI GGTGA 2 cut(s) 9, 616
Hpy166II GTNNAC 2 cut(s) 215, 921
Hpy188I TCNGA 8 cut(s) 27, 100, 142, 532, 726, 908, 954, 960
Hpy188III TCNNGA 3 cut(s) 42, 82, 163
Hpy8I GTNNAC 2 cut(s) 215, 921
HpyAV CCTTC 5 cut(s) 39, 203, 388, 424, 542
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 811
HpyF3I CTNAG 6 cut(s) 24, 52, 62, 294, 335, 636
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 3 cut(s) 376, 477, 695
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
Lsp1109I GCAGC 5 cut(s) 178, 256, 284, 466, 823
LweI GCATC 2 cut(s) 178, 792
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 2 cut(s) 7, 67
MalI GATC 7 cut(s) 40, 300, 498, 529, 534, 723, 840
MboI GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
MboII GAAGA 5 cut(s) 425, 439, 623, 966, 973
MflI RGATCY 3 cut(s) 38, 298, 527
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 5 cut(s) 278, 319, 614, 772, 979
MluNI TGGCCA 1 cut(s) 575
MnlI CCTC 7 cut(s) 228, 266, 289, 301, 689, 802, 882
Mox20I TGGCCA 1 cut(s) 575
Mph1103I ATGCAT 1 cut(s) 904
MroXI GAANNNNTTC 1 cut(s) 902
MscI TGGCCA 1 cut(s) 575
MseI TTAA 3 cut(s) 504, 567, 743
MslI CAYNNNNRTG 2 cut(s) 264, 377
Msp20I TGGCCA 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 814
MspR9I CCNGG 2 cut(s) 537, 572
Mva1269I GAATGC 2 cut(s) 902, 904
MvaI CCWGG 2 cut(s) 537, 572
MwoI GCNNNNNNNGC 2 cut(s) 72, 811
NdeII GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
NlaIII CATG 3 cut(s) 376, 477, 695
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 2 cut(s) 376, 695
NspV TTCGAA 1 cut(s) 323
PaeI GCATGC 1 cut(s) 695
PaeR7I CTCGAG 1 cut(s) 82
PciI ACATGT 1 cut(s) 372
PctI GAATGC 2 cut(s) 902, 904
PdmI GAANNNNTTC 1 cut(s) 902
PfeI GAWTC 5 cut(s) 137, 645, 717, 955, 971
Pfl23II CGTACG 1 cut(s) 669
PkrI GCNGC 5 cut(s) 193, 271, 274, 481, 813
Ppu21I YACGTR 1 cut(s) 669
PpuMI RGGWCCY 2 cut(s) 48, 397
PscI ACATGT 1 cut(s) 372
PshAI GACNNNNGTC 1 cut(s) 173
Psp5II RGGWCCY 2 cut(s) 48, 397
Psp6I CCWGG 2 cut(s) 535, 570
PspEI GGTNACC 1 cut(s) 7
PspFI CCCAGC 1 cut(s) 552
PspGI CCWGG 2 cut(s) 535, 570
PspLI CGTACG 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 2 cut(s) 48, 397
PspPPI RGGWCCY 2 cut(s) 48, 397
PstI CTGCAG 3 cut(s) 196, 274, 865
PsuI RGATCY 3 cut(s) 38, 298, 527
PvuII CAGCTG 1 cut(s) 814
RsaI GTAC 3 cut(s) 203, 371, 671
RsaNI GTAC 3 cut(s) 202, 370, 670
RseI CAYNNNNRTG 2 cut(s) 264, 377
SaqAI TTAA 3 cut(s) 504, 567, 743
SatI GCNGC 5 cut(s) 192, 270, 273, 480, 812
Sau3AI GATC 7 cut(s) 38, 298, 496, 527, 532, 721, 838
Sau96I GGNCC 2 cut(s) 48, 397
ScrFI CCNGG 2 cut(s) 537, 572
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 2 cut(s) 178, 792
SfcI CTRYAG 4 cut(s) 192, 270, 861, 883
Sfr274I CTCGAG 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 323
SinI GGWCC 2 cut(s) 48, 397
SlaI CTCGAG 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 264, 377
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SnaBI TACGTA 1 cut(s) 669
SpeI ACTAGT 1 cut(s) 233
SphI GCATGC 1 cut(s) 695
Sse9I AATT 5 cut(s) 278, 319, 614, 772, 979
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 592
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 535, 570
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 1 cut(s) 671
TaqI TCGA 4 cut(s) 43, 83, 323, 720
TasI AATT 5 cut(s) 278, 319, 614, 772, 979
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 5 cut(s) 137, 645, 717, 955, 971
Tru1I TTAA 3 cut(s) 504, 567, 743
Tru9I TTAA 3 cut(s) 504, 567, 743
TscAI CASTG 4 cut(s) 266, 384, 848, 865
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 5 cut(s) 191, 269, 272, 479, 811
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 17, 462, 534, 624
TspRI CASTG 4 cut(s) 266, 384, 848, 865
VpaK11BI GGWCC 2 cut(s) 48, 397
XagI CCTNNNNNAGG 1 cut(s) 886
XapI RAATTY 3 cut(s) 319, 614, 979
XceI RCATGY 2 cut(s) 376, 695
XhoI CTCGAG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 902
XspI CTAG 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.