RLG00000012629

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017988
Physical Location & Seq
Forward (+)
20680140 .. 20680754
615 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012629

Sequence Viewer

Length: 474 bp
ATGTTGCCAGCAATTGCTAATGGTCGCATGTCAAACAATGGGAACCCTGCAGAAAACGGTAACGGTAGGAATCCGGATAGGCCATCTTTGAGGAATTGGAGAAACAAGCTGACTATCCTTCTTATTGATGAATCTGAAAACCACAGGATTCTGGGGACGGCGTATCTTACAGCTTATGGTGTCGAAACTACATCTGTGACTGATGGACGGGCTGCTTTGGAGCTCATATTTTCTGGTGCTAGGTTCAGTTTGATCCTCATTGACATGCATATGCGCTATATGAGCGGTGCACAGTGTGTGAGTCACCTTCGAACCATGGGAGTGAGGTCCCTGATGCTCGGTATGACAACTTTTTGTAGAGAAAGAGAGGAACGGGCATTTCTCGAAGCGGGGGGTAATGGCTTCATTCCAAAGCCTCTTAGTCCTGATAACTTTCTTCAAGTCCTGGAAGCGCTGGATAACAACCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

6.83

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 39 - 149 4.9e-14 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017988)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19840
rosa_chinensis RchiOBHm_Chr6g0285541
rosa_laevigata RLG00000012629
rosa_roxburghii Rroxscaffold_7G00183040
rosa_rugosa Rorug06G0175300 Rorug06G0175300
rosa_samantha Rh6AG286900 Rh6BG288100 Rh6CG289300 Rh6DG282100
rosa_wichuraiana Rw6G024660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 2 cut(s) 285, 389
AclWI GGATC 1 cut(s) 247
AdeI CACNNNGTG 1 cut(s) 296
AfeI AGCGCT 1 cut(s) 453
AgsI TTSAA 1 cut(s) 440
AjnI CCWGG 2 cut(s) 444, 465
AluBI AGCT 3 cut(s) 109, 173, 223
AluI AGCT 3 cut(s) 109, 173, 223
Alw21I GWGCWC 2 cut(s) 225, 292
Alw44I GTGCAC 1 cut(s) 288
AlwI GGATC 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 73
Aor51HI AGCGCT 1 cut(s) 453
AoxI GGCC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 276, 454
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 225, 292
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 91, 197
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 446, 467
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 455
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 446, 467
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmiI GGNNCC 2 cut(s) 44, 329
BmrFI CCNGG 2 cut(s) 446, 467
BmsI GCATC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 315, 466
BsaWI WCCGGW 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 2 cut(s) 446, 467
BseDI CCNNGG 2 cut(s) 315, 466
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 225, 292
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 2 cut(s) 169, 313
BsmFI GGGAC 2 cut(s) 169, 313
BsnI GGCC 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 225, 292
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 2 cut(s) 285, 389
BspANI GGCC 1 cut(s) 82
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 44, 329
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 310
BsrBI CCGCTC 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 315, 466
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 446, 467
Bst4CI ACNGT 3 cut(s) 59, 65, 294
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 419
BstDSI CCRYGG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 2 cut(s) 276, 454
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 2 cut(s) 446, 467
BstNSI RCATGY 2 cut(s) 31, 268
BstSCI CCNGG 2 cut(s) 444, 465
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 2 cut(s) 276, 454
Cfr13I GGNCC 1 cut(s) 327
CviAII CATG 3 cut(s) 28, 265, 316
CviJI RGCY 7 cut(s) 82, 109, 173, 212, 223, 402, 415
CviKI_1 RGCY 7 cut(s) 82, 109, 173, 212, 223, 402, 415
DdeI CTNAG 1 cut(s) 419
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DraIII CACNNNGTG 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 327
Eco47III AGCGCT 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 444, 465
EcoT14I CCWWGG 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 31, 268, 319
FaqI GGGAC 2 cut(s) 169, 313
FatI CATG 3 cut(s) 27, 264, 315
FauI CCCGC 1 cut(s) 382
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 240
GlaI GCGC 2 cut(s) 275, 453
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 74
HhaI GCGC 2 cut(s) 276, 454
Hin1II CATG 3 cut(s) 31, 268, 319
Hin6I GCGC 2 cut(s) 274, 452
HinP1I GCGC 2 cut(s) 274, 452
HinfI GANTC 4 cut(s) 70, 131, 148, 301
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 74, 383, 425
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 128, 317
HpyCH4III ACNGT 3 cut(s) 59, 65, 294
HpyCH4V TGCA 3 cut(s) 50, 268, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 419
Hsp92II CATG 3 cut(s) 31, 268, 319
HspAI GCGC 2 cut(s) 274, 452
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 324
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 59, 196, 302
MalI GATC 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 285
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 428
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 2 cut(s) 225, 292
MluCI AATT 2 cut(s) 12, 94
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 5 cut(s) 84, 266, 318, 361, 426
Mph1103I ATGCAT 1 cut(s) 270
MroI TCCGGA 1 cut(s) 73
MslI CAYNNNNRTG 3 cut(s) 263, 269, 320
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 446, 467
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 2 cut(s) 446, 467
MwoI GCNNNNNNNGC 1 cut(s) 282
NcoI CCATGG 1 cut(s) 315
NdeI CATATG 1 cut(s) 270
NdeII GATC 1 cut(s) 252
NlaIII CATG 3 cut(s) 31, 268, 319
NlaIV GGNNCC 2 cut(s) 44, 329
NmuCI GTSAC 2 cut(s) 196, 302
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 2 cut(s) 31, 268
NspV TTCGAA 1 cut(s) 310
PfeI GAWTC 3 cut(s) 70, 131, 148
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
PpuMI RGGWCCY 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 444, 465
PspGI CCWGG 2 cut(s) 444, 465
PspN4I GGNNCC 2 cut(s) 44, 329
PspPI GGNCC 1 cut(s) 327
PspPPI RGGWCCY 1 cut(s) 327
PstI CTGCAG 1 cut(s) 52
RseI CAYNNNNRTG 3 cut(s) 263, 269, 320
SacI GAGCTC 1 cut(s) 225
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 327
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 446, 467
SduI GDGCHC 2 cut(s) 225, 292
SetI ASST 6 cut(s) 111, 175, 225, 245, 309, 329
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 3 cut(s) 263, 269, 320
Sse9I AATT 2 cut(s) 12, 94
SsiI CCGC 2 cut(s) 285, 389
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 444, 465
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 59, 65, 294
TaqI TCGA 3 cut(s) 183, 310, 384
TasI AATT 2 cut(s) 12, 94
TfiI GAWTC 3 cut(s) 70, 131, 148
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 2 cut(s) 196, 302
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 2 cut(s) 196, 302
TspDTI ATGAA 2 cut(s) 144, 394
TspRI CASTG 1 cut(s) 299
VneI GTGCAC 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 327
XceI RCATGY 2 cut(s) 31, 268
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.