No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g21771 |
| prunus_persica | Prupe.8G225700_v2.0.a1 |
| rosa_laevigata | RLG00000012403 |
| rosa_multiflora | Rmu_sc0001038.1_g000026 |
| rosa_roxburghii | Rroxscaffold_7G00180060 |
| rosa_samantha | Rh6AG307800 Rh6CG321200 Rh6DG306600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 198 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 343 |
| AgsI | TTSAA | 3 cut(s) | 119, 274, 318 |
| AluBI | AGCT | 1 cut(s) | 277 |
| AluI | AGCT | 1 cut(s) | 277 |
| Alw26I | GTCTC | 1 cut(s) | 219 |
| AoxI | GGCC | 1 cut(s) | 362 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 311, 343 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 165 |
| AspS9I | GGNCC | 1 cut(s) | 346 |
| AvaII | GGWCC | 1 cut(s) | 346 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 110, 143 |
| BccI | CCATC | 1 cut(s) | 52 |
| BcoDI | GTCTC | 1 cut(s) | 219 |
| BfaI | CTAG | 2 cut(s) | 207, 219 |
| BglII | AGATCT | 1 cut(s) | 221 |
| Bme18I | GGWCC | 1 cut(s) | 346 |
| BmgT120I | GGNCC | 1 cut(s) | 346 |
| BmiI | GGNNCC | 2 cut(s) | 335, 348 |
| BmrI | ACTGGG | 1 cut(s) | 76 |
| BmsI | GCATC | 2 cut(s) | 86, 163 |
| BmuI | ACTGGG | 1 cut(s) | 76 |
| BpmI | CTGGAG | 1 cut(s) | 41 |
| BpuEI | CTTGAG | 1 cut(s) | 351 |
| BsaJI | CCNNGG | 1 cut(s) | 192 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 343 |
| Bse1I | ACTGG | 1 cut(s) | 71 |
| BseDI | CCNNGG | 1 cut(s) | 192 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 343 |
| BseMII | CTCAG | 1 cut(s) | 122 |
| BseNI | ACTGG | 1 cut(s) | 71 |
| BshFI | GGCC | 1 cut(s) | 364 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 343 |
| BsmAI | GTCTC | 1 cut(s) | 219 |
| BsnI | GGCC | 1 cut(s) | 364 |
| Bsp143I | GATC | 1 cut(s) | 221 |
| Bsp19I | CCATGG | 1 cut(s) | 192 |
| BspANI | GGCC | 1 cut(s) | 364 |
| BspCNI | CTCAG | 1 cut(s) | 123 |
| BspLI | GGNNCC | 2 cut(s) | 335, 348 |
| BsrI | ACTGG | 1 cut(s) | 71 |
| BssECI | CCNNGG | 1 cut(s) | 192 |
| BssMI | GATC | 1 cut(s) | 221 |
| BssT1I | CCWWGG | 1 cut(s) | 192 |
| BstDEI | CTNAG | 1 cut(s) | 131 |
| BstDSI | CCRYGG | 1 cut(s) | 192 |
| BstKTI | GATC | 1 cut(s) | 224 |
| BstMAI | GTCTC | 1 cut(s) | 219 |
| BstMBI | GATC | 1 cut(s) | 221 |
| BstX2I | RGATCY | 1 cut(s) | 221 |
| BstYI | RGATCY | 1 cut(s) | 221 |
| BsuRI | GGCC | 1 cut(s) | 364 |
| BtgI | CCRYGG | 1 cut(s) | 192 |
| Cfr13I | GGNCC | 1 cut(s) | 346 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 52, 87, 341, 376 |
| CviAII | CATG | 2 cut(s) | 193, 330 |
| CviJI | RGCY | 6 cut(s) | 136, 252, 277, 298, 305, 364 |
| CviKI_1 | RGCY | 6 cut(s) | 136, 252, 277, 298, 305, 364 |
| DdeI | CTNAG | 1 cut(s) | 131 |
| DpnI | GATC | 1 cut(s) | 223 |
| DpnII | GATC | 1 cut(s) | 221 |
| Eco130I | CCWWGG | 1 cut(s) | 192 |
| Eco47I | GGWCC | 1 cut(s) | 346 |
| Eco57I | CTGAAG | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 1 cut(s) | 192 |
| ErhI | CCWWGG | 1 cut(s) | 192 |
| FaeI | CATG | 2 cut(s) | 196, 333 |
| FaiI | YATR | 3 cut(s) | 101, 194, 331 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 99, 131 |
| FatI | CATG | 2 cut(s) | 192, 329 |
| FspBI | CTAG | 2 cut(s) | 207, 219 |
| GsuI | CTGGAG | 1 cut(s) | 41 |
| HaeIII | GGCC | 1 cut(s) | 364 |
| Hin1II | CATG | 2 cut(s) | 196, 333 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HinfI | GANTC | 2 cut(s) | 110, 188 |
| Hpy166II | GTNNAC | 1 cut(s) | 239 |
| Hpy188I | TCNGA | 1 cut(s) | 132 |
| Hpy188III | TCNNGA | 1 cut(s) | 170 |
| Hpy8I | GTNNAC | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 2 cut(s) | 59, 77 |
| HpyF3I | CTNAG | 1 cut(s) | 131 |
| Hsp92II | CATG | 2 cut(s) | 196, 333 |
| Kzo9I | GATC | 1 cut(s) | 221 |
| LpnPI | CCDG | 4 cut(s) | 5, 52, 183, 352 |
| LweI | GCATC | 2 cut(s) | 86, 163 |
| MaeI | CTAG | 2 cut(s) | 207, 219 |
| MaeIII | GTNAC | 2 cut(s) | 111, 370 |
| MalI | GATC | 1 cut(s) | 223 |
| MboI | GATC | 1 cut(s) | 221 |
| MboII | GAAGA | 3 cut(s) | 191, 194, 267 |
| MflI | RGATCY | 1 cut(s) | 221 |
| MlyI | GAGTC | 2 cut(s) | 119, 197 |
| MmeI | TCCRAC | 1 cut(s) | 362 |
| MnlI | CCTC | 4 cut(s) | 45, 126, 360, 375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 165 |
| MslI | CAYNNNNRTG | 1 cut(s) | 149 |
| NcoI | CCATGG | 1 cut(s) | 192 |
| NdeII | GATC | 1 cut(s) | 221 |
| NlaIII | CATG | 2 cut(s) | 196, 333 |
| NlaIV | GGNNCC | 2 cut(s) | 335, 348 |
| NmuCI | GTSAC | 1 cut(s) | 111 |
| PdmI | GAANNNNTTC | 1 cut(s) | 165 |
| PleI | GAGTC | 2 cut(s) | 118, 196 |
| PpsI | GAGTC | 2 cut(s) | 118, 196 |
| PspN4I | GGNNCC | 2 cut(s) | 335, 348 |
| PspPI | GGNCC | 1 cut(s) | 346 |
| PsuI | RGATCY | 1 cut(s) | 221 |
| RseI | CAYNNNNRTG | 1 cut(s) | 149 |
| Sau3AI | GATC | 1 cut(s) | 221 |
| Sau96I | GGNCC | 1 cut(s) | 346 |
| SchI | GAGTC | 2 cut(s) | 119, 197 |
| SetI | ASST | 6 cut(s) | 37, 58, 279, 329, 362, 382 |
| SfaNI | GCATC | 2 cut(s) | 86, 163 |
| SinI | GGWCC | 1 cut(s) | 346 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 149 |
| SmlI | CTYRAG | 1 cut(s) | 366 |
| SmoI | CTYRAG | 1 cut(s) | 366 |
| SspMI | CTAG | 2 cut(s) | 207, 219 |
| StyI | CCWWGG | 1 cut(s) | 192 |
| TseFI | GTSAC | 1 cut(s) | 111 |
| Tsp45I | GTSAC | 1 cut(s) | 111 |
| TspDTI | ATGAA | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 1 cut(s) | 346 |
| XmnI | GAANNNNTTC | 1 cut(s) | 165 |
| XspI | CTAG | 2 cut(s) | 207, 219 |