Rroxscaffold_7G00180060

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
19599660 .. 19600581
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180060.1

Sequence Viewer

Length: 378 bp
ATGAGGCAAAGAGAGTTGCTGGAGTTTAGAACACCTCAACACCCATCGTCATTGGGTGCAAACAACTGGGGTGGTGCATCTCCCTTATTAGCAAGAAACATACCGAAAGAGTCACTTGAACAGAAGTATCTGAAGCTCAACACCATTCGCCTGCGTGATGAAATCTTTCCTGATGCTGGGGAAGATGAGTCCATGGATTACTTACCTAGAAACTCTACTGGCCCTAAACAAGAATGTCCACCAACACCGAGCCGAAGAAAAAGATTTCTATCGAAACTTTTCTTGTCATCTCCAAAGCCAAAGGCTAATTTGGGTTCAAAGAAAAAGTCATGGTTCCCTAGATGGGACCCTCAAAATAGGTGGCCTCAAGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.56

Weight (kDa)

10.19

Isoelectric Point (pI)

68.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21771
prunus_persica Prupe.8G225700_v2.0.a1
rosa_laevigata RLG00000012403
rosa_multiflora Rmu_sc0001038.1_g000026
rosa_roxburghii Rroxscaffold_7G00180060
rosa_samantha Rh6AG307800 Rh6CG321200 Rh6DG306600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 176, 343
AgsI TTSAA 2 cut(s) 119, 318
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AoxI GGCC 2 cut(s) 220, 362
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 2 cut(s) 165, 278
AspS9I GGNCC 2 cut(s) 221, 346
AvaII GGWCC 1 cut(s) 346
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BccI CCATC 2 cut(s) 52, 336
BfaI CTAG 2 cut(s) 207, 339
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 221, 346
BmiI GGNNCC 3 cut(s) 335, 347, 348
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 86, 163
BmuI ACTGGG 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 343
Bse1I ACTGG 2 cut(s) 71, 223
Bse8I GATNNNNATC 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 176, 343
BseNI ACTGG 2 cut(s) 71, 223
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 222, 364
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 176, 343
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 2 cut(s) 222, 364
Bsp19I CCATGG 1 cut(s) 192
BspANI GGCC 2 cut(s) 222, 364
BspLI GGNNCC 3 cut(s) 335, 347, 348
BsrI ACTGG 2 cut(s) 71, 223
BssECI CCNNGG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 222, 364
BtgI CCRYGG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 221, 346
CspCI CAANNNNNGTGG 4 cut(s) 52, 87, 341, 376
CviAII CATG 2 cut(s) 193, 330
CviJI RGCY 6 cut(s) 136, 222, 252, 298, 305, 364
CviKI_1 RGCY 6 cut(s) 136, 222, 252, 298, 305, 364
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 196, 333
FaiI YATR 3 cut(s) 101, 194, 331
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 1 cut(s) 359
FatI CATG 2 cut(s) 192, 329
FspBI CTAG 2 cut(s) 207, 339
GsaI CCCAGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 222, 364
Hin1II CATG 2 cut(s) 196, 333
HinfI GANTC 2 cut(s) 110, 188
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 59, 77
Hsp92II CATG 2 cut(s) 196, 333
KflI GGGWCCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 5, 52, 162, 164, 183, 204
LweI GCATC 2 cut(s) 86, 163
MaeI CTAG 2 cut(s) 207, 339
MaeIII GTNAC 1 cut(s) 111
MboII GAAGA 2 cut(s) 194, 267
MluCI AATT 1 cut(s) 307
MlyI GAGTC 2 cut(s) 119, 197
MnlI CCTC 3 cut(s) 45, 360, 375
MroXI GAANNNNTTC 2 cut(s) 165, 278
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 2 cut(s) 196, 333
NlaIV GGNNCC 3 cut(s) 335, 347, 348
NmuCI GTSAC 1 cut(s) 111
PdmI GAANNNNTTC 2 cut(s) 165, 278
PleI GAGTC 2 cut(s) 118, 196
PpsI GAGTC 2 cut(s) 118, 196
PpuMI RGGWCCY 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 335, 347, 348
PspPI GGNCC 2 cut(s) 221, 346
PspPPI RGGWCCY 1 cut(s) 346
Sau96I GGNCC 2 cut(s) 221, 346
SchI GAGTC 2 cut(s) 119, 197
SetI ASST 5 cut(s) 37, 138, 208, 362, 373
SfaNI GCATC 2 cut(s) 86, 163
SinI GGWCC 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 1 cut(s) 307
SspMI CTAG 2 cut(s) 207, 339
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 1 cut(s) 272
TasI AATT 1 cut(s) 307
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 346
XmnI GAANNNNTTC 2 cut(s) 165, 278
XspI CTAG 2 cut(s) 207, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.