Prupe.8G225700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0019203
Physical Location & Seq
Forward (+)
20279645 .. 20280377
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G225700.1

Sequence Viewer

Length: 396 bp
ATGAGGCAGAGAGACTTGCTGGAATTTAGAACACCCCAACACCCATCATCACTGGGGTTGGCCGCAAACAACTGGGGTGGTGCTTCTCCCTTGTTAGCAAGAAACATACCAAAAGAGTCACTTGAACAGAAGTATCTGAGGCTCAACACAATTCGAACACGCGACGAGATCTTCCCAGCTGATGATGAGTTCAACAACCTGCCTAAGTCTCCTGCATCTAAACAACAGTGTCCTCCAACGCCAAGCGGGAGCAGAAAACAATTTACCTTGAAGCTTTTGTTCACACCAAAGAGGAAGACTGCTGCTGCTACTACTACTACACTGGGTTCAAATTCAAAGAAGAAGTCATGGTTCCCAAGATTGGATCCTCAGAAAAGGTGGCCTCAAGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.93

Weight (kDa)

10.64

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21771
prunus_persica Prupe.8G225700_v2.0.a1
rosa_laevigata RLG00000012403
rosa_multiflora Rmu_sc0001038.1_g000026
rosa_roxburghii Rroxscaffold_7G00180060
rosa_samantha Rh6AG307800 Rh6CG321200 Rh6DG306600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 63, 246
AclWI GGATC 2 cut(s) 359, 372
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 23, 331
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 5 cut(s) 125, 193, 271, 330, 336
AluBI AGCT 2 cut(s) 179, 274
AluI AGCT 2 cut(s) 179, 274
Alw26I GTCTC 2 cut(s) 6, 213
AlwI GGATC 2 cut(s) 359, 372
AoxI GGCC 2 cut(s) 60, 380
ApeKI GCWGC 2 cut(s) 302, 305
ApoI RAATTY 2 cut(s) 23, 331
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AsuII TTCGAA 1 cut(s) 154
BaeI ACNNNNGTAYC 2 cut(s) 116, 149
BamHI GGATCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 289, 292
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 6, 213
BfuAI ACCTGC 1 cut(s) 207
BglII AGATCT 1 cut(s) 168
BisI GCNGC 3 cut(s) 63, 303, 306
BlsI GCNGC 3 cut(s) 64, 304, 307
BmiI GGNNCC 2 cut(s) 353, 366
BmrI ACTGGG 3 cut(s) 62, 82, 332
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 3 cut(s) 62, 82, 332
BpiI GAAGAC 1 cut(s) 302
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 3 cut(s) 57, 77, 327
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 128, 383
BseNI ACTGG 3 cut(s) 57, 77, 327
BseXI GCAGC 2 cut(s) 289, 292
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 62, 382
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 6, 213
BsnI GGCC 2 cut(s) 62, 382
Bsp119I TTCGAA 1 cut(s) 154
Bsp143I GATC 2 cut(s) 168, 364
BspACI CCGC 2 cut(s) 63, 246
BspANI GGCC 2 cut(s) 62, 382
BspCNI CTCAG 2 cut(s) 129, 382
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 353, 366
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 359, 372
BspT104I TTCGAA 1 cut(s) 154
BsrI ACTGG 3 cut(s) 57, 77, 327
BssMI GATC 2 cut(s) 168, 364
Bst4CI ACNGT 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 137, 204, 369
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 2 cut(s) 171, 367
BstMAI GTCTC 2 cut(s) 6, 213
BstMBI GATC 2 cut(s) 168, 364
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 289, 292
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 2 cut(s) 168, 364
BstYI RGATCY 2 cut(s) 168, 364
BsuRI GGCC 2 cut(s) 62, 382
BtsIMutI CAGTG 3 cut(s) 50, 233, 320
BveI ACCTGC 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 348
CviJI RGCY 5 cut(s) 62, 142, 179, 274, 382
CviKI_1 RGCY 5 cut(s) 62, 142, 179, 274, 382
DdeI CTNAG 3 cut(s) 137, 204, 369
DpnI GATC 2 cut(s) 170, 366
DpnII GATC 2 cut(s) 168, 364
EaeI YGGCCR 1 cut(s) 60
FaeI CATG 1 cut(s) 351
FaiI YATR 2 cut(s) 107, 349
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 1 cut(s) 347
FauI CCCGC 1 cut(s) 239
Fnu4HI GCNGC 3 cut(s) 63, 303, 306
Fsp4HI GCNGC 3 cut(s) 63, 303, 306
GluI GCNGC 3 cut(s) 63, 303, 306
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 2 cut(s) 62, 382
Hin1II CATG 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 2 cut(s) 138, 372
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 137, 204, 369
Hsp92II CATG 1 cut(s) 351
Kzo9I GATC 2 cut(s) 168, 364
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 7 cut(s) 5, 38, 58, 189, 212, 225, 308
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 170, 366
MboI GATC 2 cut(s) 168, 364
MboII GAAGA 3 cut(s) 163, 307, 352
MflI RGATCY 2 cut(s) 168, 364
MluCI AATT 4 cut(s) 23, 150, 260, 331
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 5 cut(s) 132, 243, 285, 378, 393
MspA1I CMGCKG 1 cut(s) 179
MvnI CGCG 1 cut(s) 162
NdeII GATC 2 cut(s) 168, 364
NlaIII CATG 1 cut(s) 351
NlaIV GGNNCC 2 cut(s) 353, 366
NmuCI GTSAC 1 cut(s) 117
NspV TTCGAA 1 cut(s) 154
PkrI GCNGC 3 cut(s) 64, 304, 307
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 353, 366
PsuI RGATCY 2 cut(s) 168, 364
PvuII CAGCTG 1 cut(s) 179
SatI GCNGC 3 cut(s) 63, 303, 306
Sau3AI GATC 2 cut(s) 168, 364
SchI GAGTC 1 cut(s) 125
SetI ASST 6 cut(s) 181, 201, 269, 276, 380, 391
SfaNI GCATC 1 cut(s) 224
SfuI TTCGAA 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
Sse9I AATT 4 cut(s) 23, 150, 260, 331
SsiI CCGC 2 cut(s) 63, 246
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 154
TasI AATT 4 cut(s) 23, 150, 260, 331
TauI GCSGC 1 cut(s) 65
TscAI CASTG 3 cut(s) 57, 233, 327
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 2 cut(s) 302, 305
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 3 cut(s) 57, 233, 327
XapI RAATTY 2 cut(s) 23, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.