FvH4_2g40202

mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0019676
Physical Location & Seq
Forward (+)
28691425 .. 28691838
414 bp
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UTR
Exon/CDS
Intron
FvH4_2g40202.t1

Sequence Viewer

Length: 414 bp
ATGGGTCAGTTAAGATATTTTCTTGGAATAGAGGTGGCAAGGTCCAAGCAAGGCATTGTTCTGTGCCAACGAAAGTATGCACTGGAGGTTCTCGAAGATGCAGGCTTTCTGGGTGCCAAGCCTTCCCAATTCCCAGTTGAGCAGAACTTAGTATTAACTCAAGAAGATGGCGATGTGTTAAAGGATGCTTCCCAGTATCGAAGAATGGTTGGGAGACTCATATACCTTACAATCACAAGACCAGACCTTGTCTACGCTATGCATATCCTAAGTCAATTTATGGGTAAGCCTAGACAACCTCATCTAGATGCAGCGTACAAGGTTTTGAGATATGTTAAACAAACGCCAGGACAAGGAATACTCTTGCCTTCCACAGGACAGTTGGAGCTCAAGGTGTATTGTGATGCAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

8.89

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40202
rosa_chinensis RchiOBHm_Chr1g0369901 RchiOBHm_Chr2g0121901
rosa_laevigata RLG00000035900
rosa_roxburghii Rroxscaffold_3G00244770 Rroxscaffold_5G00337010
rosa_wichuraiana Rw2G023390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 252
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 353, 374
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 42
AvaII GGWCC 1 cut(s) 42
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 323
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 2 cut(s) 291, 305
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 2 cut(s) 128, 187
BmsI GCATC 4 cut(s) 88, 175, 298, 394
BmuI ACTGGG 2 cut(s) 128, 187
BpmI CTGGAG 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 144, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 374
Bse1I ACTGG 3 cut(s) 87, 134, 193
BseBI CCWGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 353, 374
BseNI ACTGG 3 cut(s) 87, 134, 193
BseXI GCAGC 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 353, 374
BsmAI GTCTC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 3 cut(s) 87, 134, 193
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 148, 269
BstENI CCTNNNNNAGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 316
CviJI RGCY 4 cut(s) 105, 121, 289, 388
CviKI_1 RGCY 4 cut(s) 105, 121, 289, 388
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 148, 269
Ecl136II GAGCTC 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 388
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 346
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 390
FaiI YATR 7 cut(s) 78, 221, 223, 260, 264, 281, 333
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 2 cut(s) 291, 305
GluI GCNGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 104
HinfI GANTC 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 92, 161, 305
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 132, 378
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4V TGCA 5 cut(s) 80, 101, 262, 311, 407
HpyF3I CTNAG 2 cut(s) 148, 269
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 9 cut(s) 68, 87, 95, 147, 206, 255, 333, 360, 360
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 4 cut(s) 88, 175, 298, 394
MaeI CTAG 2 cut(s) 291, 305
MboII GAAGA 3 cut(s) 107, 176, 213
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 128, 275
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 3 cut(s) 25, 79, 309
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 4 cut(s) 11, 155, 179, 336
MslI CAYNNNNRTG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
NlaIV GGNNCC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 42
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 11, 155, 179, 336
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 390
SetI ASST 9 cut(s) 36, 44, 90, 228, 249, 301, 324, 390, 396
SfaNI GCATC 4 cut(s) 88, 175, 298, 394
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 159, 389
SmoI CTYRAG 2 cut(s) 159, 389
Sse9I AATT 2 cut(s) 128, 275
SspMI CTAG 2 cut(s) 291, 305
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 93, 199
TasI AATT 2 cut(s) 128, 275
Tru1I TTAA 4 cut(s) 11, 155, 179, 336
Tru9I TTAA 4 cut(s) 11, 155, 179, 336
TscAI CASTG 1 cut(s) 87
TseI GCWGC 1 cut(s) 311
TspRI CASTG 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 42
XagI CCTNNNNNAGG 1 cut(s) 372
XbaI TCTAGA 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 2 cut(s) 291, 305
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.